Wall clock time and date at job start Mon Mar 30 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46956 * 2 1 4 4 C 1.36932 * 120.00292 * 267.25461 * 3 2 1 5 5 H 1.08000 * 120.00697 * 185.28202 * 4 3 2 6 6 C 1.38822 * 119.99758 * 5.27960 * 4 3 2 7 7 N 1.31620 * 119.99505 * 27.87355 * 6 4 3 8 8 Si 1.86798 * 119.99877 * 207.87169 * 6 4 3 9 9 H 1.48500 * 109.47035 * 95.00007 * 8 6 4 10 10 H 1.48506 * 109.46980 * 214.99355 * 8 6 4 11 11 H 1.48494 * 109.47468 * 334.99530 * 8 6 4 12 12 C 1.46498 * 120.00016 * 87.25824 * 3 2 1 13 13 H 1.09007 * 109.47251 * 180.02562 * 12 3 2 14 14 C 1.53003 * 109.47558 * 59.99964 * 12 3 2 15 15 C 1.53004 * 109.47223 * 299.99814 * 12 3 2 16 16 C 1.53783 * 113.61355 * 294.79346 * 15 12 3 17 17 C 1.53780 * 87.07624 * 220.01651 * 16 15 12 18 18 C 1.53780 * 87.17708 * 25.38903 * 17 16 15 19 19 H 1.08997 * 109.46880 * 299.99558 * 1 2 3 20 20 H 1.08990 * 109.46706 * 60.00383 * 1 2 3 21 21 H 1.09008 * 109.46734 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47411 * 239.99756 * 2 1 3 23 23 H 1.09003 * 109.47131 * 120.00109 * 2 1 3 24 24 H 0.97003 * 119.99070 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.46657 * 303.48584 * 14 12 3 26 26 H 1.08993 * 109.47012 * 63.48132 * 14 12 3 27 27 H 1.08995 * 109.47538 * 183.48839 * 14 12 3 28 28 H 1.09001 * 112.84674 * 65.98536 * 15 12 3 29 29 H 1.08992 * 113.61974 * 105.46606 * 16 15 12 30 30 H 1.09004 * 113.60887 * 334.55981 * 16 15 12 31 31 H 1.09012 * 113.61347 * 139.98361 * 17 16 15 32 32 H 1.09002 * 113.61442 * 270.79445 * 17 16 15 33 33 H 1.09003 * 113.61150 * 89.15861 * 18 17 16 34 34 H 1.08999 * 113.61392 * 220.06125 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3001 2.0078 -1.1845 5 1 2.7401 2.9941 -1.1824 6 6 2.0202 1.3753 -2.3881 7 7 1.0441 0.4950 -2.4574 8 14 3.0288 1.7735 -3.9091 9 1 4.1248 0.7814 -4.0499 10 1 2.1562 1.7206 -5.1095 11 1 3.6072 3.1348 -3.7772 12 6 2.2052 2.0920 1.2673 13 1 2.5710 3.0995 1.0683 14 6 3.2223 1.3405 2.1285 15 6 0.8694 2.1723 2.0089 16 6 -0.1884 3.0201 1.2827 17 6 -0.5868 3.5644 2.6647 18 6 0.8437 3.2348 3.1227 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5137 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 0.8484 0.0533 -3.2986 25 1 2.8857 0.3143 2.2758 26 1 4.1903 1.3370 1.6276 27 1 3.3153 1.8347 3.0955 28 1 0.5031 1.1965 2.3278 29 1 -0.9691 2.4287 0.8047 30 1 0.2363 3.7757 0.6218 31 1 -0.8108 4.6313 2.6658 32 1 -1.3528 2.9706 3.1636 33 1 1.5510 4.0492 2.9656 34 1 0.8949 2.8164 4.1279 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325496667.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:35 Heat of formation + Delta-G solvation = 26.652122 kcal Electronic energy + Delta-G solvation = -13585.587263 eV Core-core repulsion = 11519.393591 eV Total energy + Delta-G solvation = -2066.193673 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15598 -37.28226 -33.77798 -31.85633 -30.08434 -26.65292 -26.03688 -25.56610 -23.26634 -21.07429 -20.03029 -18.56856 -17.15299 -16.13719 -15.89950 -15.60923 -14.73363 -14.29645 -13.92396 -13.57805 -13.43427 -13.18886 -12.90221 -12.73890 -12.54105 -12.50322 -12.33929 -12.09279 -11.78173 -11.37540 -11.20285 -11.10410 -10.87955 -10.82134 -10.22599 -8.73095 -7.74823 -4.99574 1.47128 1.51518 1.57489 2.57861 3.31544 3.63714 3.93712 3.99604 4.09467 4.29086 4.50348 4.68062 4.76032 4.83591 4.95072 4.95525 5.02465 5.09754 5.12893 5.16963 5.29827 5.32299 5.34539 5.41723 5.56919 5.61715 5.68088 5.80089 5.90704 6.26419 6.42597 7.29861 8.05184 8.45122 9.26722 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.040983 B = 0.011935 C = 0.011716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.044223 B = 2345.549179 C = 2389.341798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.175 3.825 3 N -0.602 5.602 4 C -0.247 4.247 5 H 0.068 0.932 6 C -0.052 4.052 7 N -0.913 5.913 8 Si 0.943 3.057 9 H -0.295 1.295 10 H -0.302 1.302 11 H -0.276 1.276 12 C 0.174 3.826 13 H 0.049 0.951 14 C -0.150 4.150 15 C -0.117 4.117 16 C -0.125 4.125 17 C -0.133 4.133 18 C -0.123 4.123 19 H 0.038 0.962 20 H 0.058 0.942 21 H 0.021 0.979 22 H 0.045 0.955 23 H 0.023 0.977 24 H 0.242 0.758 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 3.172 10.345 10.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.049 3.951 3 N -0.323 5.323 4 C -0.376 4.376 5 H 0.086 0.914 6 C -0.246 4.246 7 N -0.561 5.561 8 Si 0.774 3.226 9 H -0.223 1.223 10 H -0.229 1.229 11 H -0.201 1.201 12 C 0.067 3.933 13 H 0.068 0.932 14 C -0.209 4.209 15 C -0.137 4.137 16 C -0.163 4.163 17 C -0.171 4.171 18 C -0.161 4.161 19 H 0.057 0.943 20 H 0.077 0.923 21 H 0.040 0.960 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.355 3.108 10.209 10.678 hybrid contribution 0.299 -0.076 -1.434 1.467 sum -0.055 3.032 8.775 9.284 Atomic orbital electron populations 1.22365 0.98835 0.98095 1.00797 1.20523 0.92858 0.84881 0.96808 1.44358 1.76206 1.10567 1.01161 1.19502 1.32510 1.00826 0.84807 0.91448 1.25208 0.99247 1.00946 0.99237 1.70367 1.27901 1.33093 1.24751 0.85585 0.79081 0.77517 0.80467 1.22287 1.22909 1.20060 1.20542 0.93216 0.94366 0.85137 0.93233 1.22113 0.98679 1.00483 0.99622 1.23069 0.96495 0.97586 0.96567 1.22678 0.98400 0.98900 0.96275 1.22822 0.97322 1.01054 0.95875 1.22887 0.96777 0.98299 0.98101 0.94321 0.92303 0.96001 0.93687 0.95916 0.94804 0.93596 0.94221 0.90812 0.90612 0.94149 0.92712 0.90996 0.89790 0.90134 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.64 9.08 71.98 0.65 -5.99 16 2 C 0.17 8.50 5.23 86.38 0.45 8.95 16 3 N -0.60 -29.31 2.34 -678.00 -1.59 -30.90 16 4 C -0.25 -13.44 9.68 84.04 0.81 -12.62 16 5 H 0.07 3.65 7.80 -2.91 -0.02 3.63 16 6 C -0.05 -2.88 4.87 84.86 0.41 -2.47 16 7 N -0.91 -52.71 8.50 21.65 0.18 -52.52 16 8 Si 0.94 45.59 29.64 68.60 2.03 47.62 16 9 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 10 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 C 0.17 6.86 2.42 44.99 0.11 6.97 16 13 H 0.05 2.02 7.70 -2.38 -0.02 2.00 16 14 C -0.15 -5.06 9.20 71.98 0.66 -4.40 16 15 C -0.12 -4.02 1.93 -10.21 -0.02 -4.04 16 16 C -0.12 -4.52 7.05 31.12 0.22 -4.30 16 17 C -0.13 -3.59 8.07 31.12 0.25 -3.34 16 18 C -0.12 -3.24 7.44 31.18 0.23 -3.01 16 19 H 0.04 1.64 4.11 -2.39 -0.01 1.63 16 20 H 0.06 3.19 6.15 -2.39 -0.01 3.18 16 21 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 22 H 0.04 2.50 5.96 -2.39 -0.01 2.48 16 23 H 0.02 1.01 6.37 -2.39 -0.02 0.99 16 24 H 0.24 13.80 8.31 -92.71 -0.77 13.03 16 25 H 0.04 1.56 6.54 -2.39 -0.02 1.54 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 2.01 7.97 -2.39 -0.02 1.99 16 28 H 0.08 2.69 6.63 -2.39 -0.02 2.68 16 29 H 0.04 1.61 6.98 -2.39 -0.02 1.60 16 30 H 0.05 2.20 8.10 -2.38 -0.02 2.18 16 31 H 0.07 1.73 8.14 -2.38 -0.02 1.72 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.06 8.05 -2.39 -0.02 2.04 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -58.60 258.13 5.47 -53.13 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.05 Total: 6.90 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 3.79 Total: -24.24 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -1.40 Total: -83.42 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -58.60 5.47 -53.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325496667.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.786 kcal (2) G-P(sol) polarization free energy of solvation -58.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds