Wall clock time and date at job start Mon Mar 30 2020 01:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47210 * 2 1 4 4 C 1.50700 * 109.47140 * 239.99343 * 2 1 3 5 5 H 1.07996 * 120.00377 * 240.00323 * 4 2 1 6 6 C 1.37881 * 119.99495 * 60.00948 * 4 2 1 7 7 N 1.31510 * 120.00323 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99912 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47270 * 89.99660 * 8 6 4 10 10 H 1.48502 * 109.47510 * 209.99681 * 8 6 4 11 11 H 1.48500 * 109.47065 * 329.99843 * 8 6 4 12 12 N 1.46906 * 109.46736 * 120.00001 * 2 1 3 13 13 C 1.46901 * 110.99793 * 274.99642 * 12 2 1 14 14 C 1.53000 * 109.46769 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.53004 * 115.55177 * 34.33009 * 15 14 13 17 17 C 1.53001 * 117.50064 * 248.62521 * 15 14 13 18 18 C 1.52994 * 117.50137 * 180.02562 * 15 14 13 19 19 H 1.09001 * 109.46846 * 60.00014 * 1 2 3 20 20 H 1.08994 * 109.47210 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47326 * 300.00424 * 1 2 3 22 22 H 0.97005 * 120.00592 * 179.97438 * 7 6 4 23 23 H 1.00898 * 110.99995 * 151.04565 * 12 2 1 24 24 H 1.09001 * 109.46874 * 60.00179 * 13 12 2 25 25 H 1.08992 * 109.47407 * 300.00197 * 13 12 2 26 26 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 27 27 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 28 28 H 1.08999 * 109.46923 * 85.57965 * 16 15 14 29 29 H 1.08997 * 109.47612 * 205.58182 * 16 15 14 30 30 H 1.09006 * 109.47068 * 325.58848 * 16 15 14 31 31 H 1.08997 * 117.49845 * 359.97438 * 17 15 14 32 32 H 1.08999 * 117.50024 * 145.02000 * 17 15 14 33 33 H 1.09008 * 117.50231 * 214.98172 * 18 15 14 34 34 H 1.09000 * 117.49792 * 359.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.3448 -2.1617 -4.4123 10 1 2.4874 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5949 -0.5332 3.5745 15 6 2.6597 0.4197 4.7698 16 6 1.5685 1.4911 4.8196 17 6 4.0451 0.7968 5.2983 18 6 3.1520 -0.1500 6.1016 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 0.7090 1.1613 -3.4845 23 1 2.9172 -1.1206 1.0289 24 1 1.0870 0.6164 2.5525 25 1 2.7588 1.0461 2.1183 26 1 1.9181 -1.3566 3.8030 27 1 3.5902 -0.9273 3.3692 28 1 0.6805 1.0830 5.3022 29 1 1.9280 2.3498 5.3865 30 1 1.3195 1.8035 3.8054 31 1 4.9104 0.3657 4.7948 32 1 4.1794 1.8083 5.6815 33 1 2.6985 0.2384 7.0136 34 1 3.4293 -1.2038 6.1264 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379323296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:53 Heat of formation + Delta-G solvation = -9.247572 kcal Electronic energy + Delta-G solvation = -12558.930879 eV Core-core repulsion = 10491.180478 eV Total energy + Delta-G solvation = -2067.750400 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.48935 -37.54382 -34.70409 -32.02692 -29.57206 -28.24446 -27.27148 -23.79365 -23.18260 -21.70683 -19.70291 -18.46178 -16.98330 -16.36937 -16.16826 -15.79144 -14.96631 -14.79178 -14.10222 -13.97924 -13.61807 -13.15516 -13.04319 -12.83269 -12.61477 -12.37347 -12.28784 -12.21899 -12.08806 -11.87632 -11.77726 -10.92868 -10.84031 -10.58584 -10.40100 -9.06828 -8.14093 -6.28918 1.42312 1.43379 1.53715 2.41268 2.89086 3.14136 3.53153 3.86754 3.95097 4.09892 4.26844 4.39155 4.60286 4.69016 4.81065 4.81110 4.92045 4.96535 5.05435 5.06556 5.14557 5.19404 5.23200 5.30895 5.32331 5.46029 5.48487 5.66726 5.85570 6.21059 6.46780 6.77460 6.99746 7.41723 8.91833 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066465 B = 0.006707 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.173865 B = 4173.589984 C = 4375.959664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H -0.033 1.033 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.690 5.690 13 C 0.066 3.934 14 C -0.068 4.068 15 C -0.140 4.140 16 C -0.121 4.121 17 C -0.178 4.178 18 C -0.164 4.164 19 H 0.057 0.943 20 H 0.028 0.972 21 H 0.021 0.979 22 H 0.263 0.737 23 H 0.331 0.669 24 H 0.062 0.938 25 H 0.007 0.993 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.750 -0.474 13.442 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.016 1.016 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.321 5.321 13 C -0.063 4.063 14 C -0.106 4.106 15 C -0.141 4.141 16 C -0.178 4.178 17 C -0.215 4.215 18 C -0.200 4.200 19 H 0.076 0.924 20 H 0.047 0.953 21 H 0.040 0.960 22 H 0.072 0.928 23 H 0.148 0.852 24 H 0.081 0.919 25 H 0.025 0.975 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.044 -0.598 13.475 13.828 hybrid contribution 0.891 0.375 -1.272 1.598 sum 3.935 -0.223 12.203 12.824 Atomic orbital electron populations 1.21538 0.97718 0.98861 0.98994 1.18930 0.92807 0.90696 0.87089 1.01580 1.21607 1.31826 1.12742 0.91655 0.92211 1.25780 0.95140 0.95674 1.02172 1.70028 1.37478 1.24087 1.24239 0.85440 0.78869 0.78170 0.78424 1.20015 1.20806 1.19146 1.60682 1.32109 1.33630 1.05630 1.21995 0.99470 0.93699 0.91121 1.20974 1.00915 0.97008 0.91660 1.21475 0.96832 1.00480 0.95275 1.21447 0.97354 0.96972 1.01979 1.23218 0.93403 1.00829 1.04019 1.23072 1.03166 0.99406 0.94392 0.92412 0.95294 0.96034 0.92778 0.85208 0.91930 0.97487 0.91360 0.92012 0.91745 0.91534 0.92939 0.89092 0.88134 0.87646 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.85 9.19 71.98 0.66 -5.19 16 2 C 0.21 11.34 2.60 44.17 0.11 11.46 16 3 H -0.03 -1.96 7.80 -2.39 -0.02 -1.98 16 4 C -0.54 -30.48 8.59 25.60 0.22 -30.26 16 5 H 0.06 3.29 7.62 -2.91 -0.02 3.27 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.94 11.32 21.45 0.24 -53.70 16 8 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 N -0.69 -30.63 6.30 -495.45 -3.12 -33.75 16 13 C 0.07 2.48 4.49 86.30 0.39 2.86 16 14 C -0.07 -1.99 5.66 30.59 0.17 -1.82 16 15 C -0.14 -3.42 2.47 -52.18 -0.13 -3.55 16 16 C -0.12 -2.87 9.49 71.98 0.68 -2.19 16 17 C -0.18 -3.76 9.82 30.58 0.30 -3.46 16 18 C -0.16 -3.20 9.97 30.58 0.30 -2.90 16 19 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 20 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 22 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 23 H 0.33 14.26 8.22 -89.70 -0.74 13.52 16 24 H 0.06 2.38 5.74 -2.39 -0.01 2.37 16 25 H 0.01 0.27 8.05 -2.39 -0.02 0.25 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.75 7.90 -2.39 -0.02 1.74 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.36 7.90 -2.39 -0.02 1.34 16 30 H 0.05 1.45 5.59 -2.38 -0.01 1.43 16 31 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 32 H 0.10 1.90 8.05 -2.39 -0.02 1.88 16 33 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -60.30 273.53 2.63 -57.67 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.32 Total: 17.75 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 3.17 Total: -33.96 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.88 Total: -87.45 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -60.30 2.63 -57.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379323296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.419 kcal (2) G-P(sol) polarization free energy of solvation -60.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds