Wall clock time and date at job start Mon Mar 30 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46902 * 2 1 4 4 C 1.50696 * 109.47097 * 119.99695 * 2 1 3 5 5 H 1.08000 * 120.00365 * 119.99975 * 4 2 1 6 6 C 1.37876 * 120.00078 * 300.00459 * 4 2 1 7 7 N 1.31518 * 120.00156 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47014 * 60.00191 * 8 6 4 10 10 H 1.48502 * 109.46896 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47307 * 300.00072 * 8 6 4 12 12 N 1.46896 * 109.47672 * 240.00139 * 2 1 3 13 13 C 1.46900 * 111.00303 * 84.99463 * 12 2 1 14 14 C 1.52998 * 109.47115 * 180.02562 * 13 12 2 15 15 C 1.53006 * 109.47150 * 180.02562 * 14 13 12 16 16 C 1.53001 * 115.56089 * 34.30745 * 15 14 13 17 17 C 1.53000 * 117.49776 * 180.02562 * 15 14 13 18 18 C 1.52997 * 117.49537 * 248.62494 * 15 14 13 19 19 H 1.08997 * 109.46978 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47164 * 300.00134 * 1 2 3 21 21 H 1.09007 * 109.46793 * 59.99891 * 1 2 3 22 22 H 0.96999 * 119.99616 * 180.02562 * 7 6 4 23 23 H 1.00909 * 110.99685 * 321.04438 * 12 2 1 24 24 H 1.08998 * 109.46521 * 60.00824 * 13 12 2 25 25 H 1.09000 * 109.47398 * 300.00577 * 13 12 2 26 26 H 1.08994 * 109.47409 * 60.00462 * 14 13 12 27 27 H 1.09000 * 109.47170 * 300.00362 * 14 13 12 28 28 H 1.08996 * 109.47111 * 205.68891 * 16 15 14 29 29 H 1.09000 * 109.47300 * 325.69419 * 16 15 14 30 30 H 1.09004 * 109.46610 * 85.68977 * 16 15 14 31 31 H 1.08990 * 117.49990 * 359.97438 * 17 15 14 32 32 H 1.09004 * 117.49237 * 214.97568 * 17 15 14 33 33 H 1.08999 * 117.49685 * 145.02116 * 18 15 14 34 34 H 1.08997 * 117.50044 * 359.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1207 4.0083 10 1 1.8268 -0.4198 5.2204 11 1 1.8258 -2.5201 4.0078 12 7 2.0198 -0.6924 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5952 -0.5332 -3.5744 15 6 2.6612 0.4200 -4.7694 16 6 3.0326 1.8672 -4.4398 17 6 3.1528 -0.1500 -6.1014 18 6 1.6728 0.1875 -5.9138 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 0.7094 1.1618 3.4844 23 1 1.4497 -1.4979 -1.4100 24 1 2.7589 1.0461 -2.1182 25 1 1.0871 0.6163 -2.5526 26 1 1.9186 -1.3565 -3.8030 27 1 3.5906 -0.9272 -3.3689 28 1 2.6265 2.5296 -5.2042 29 1 2.6183 2.1364 -3.4682 30 1 4.1178 1.9665 -4.4122 31 1 3.4296 -1.2039 -6.1263 32 1 3.7412 0.5060 -6.7430 33 1 1.2872 1.0655 -6.4320 34 1 0.9758 -0.6448 -5.8156 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379323297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:56 Heat of formation + Delta-G solvation = 9.062314 kcal Electronic energy + Delta-G solvation = -12557.398930 eV Core-core repulsion = 10490.442505 eV Total energy + Delta-G solvation = -2066.956424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.40789 -35.84492 -32.73985 -30.39202 -28.23883 -26.59762 -25.08232 -22.49461 -22.01994 -20.14138 -18.59037 -16.21710 -15.40278 -14.77101 -14.64732 -14.46220 -13.26043 -13.14027 -12.96186 -12.25530 -12.09158 -11.74724 -11.49794 -11.33542 -11.13286 -10.87065 -10.78078 -10.58641 -10.44970 -10.09211 -10.02029 -9.64833 -9.41239 -8.94372 -8.31783 -7.15412 -5.94106 -3.97306 3.37407 3.40901 3.44594 3.83254 4.47184 4.74418 4.87909 5.00355 5.18445 5.37117 5.55733 5.64495 5.65492 5.86205 5.89655 5.98489 6.04155 6.11638 6.16285 6.29091 6.40720 6.61885 6.65031 6.75421 6.89352 7.15752 7.44023 7.78437 7.93603 8.33485 8.61037 8.69001 9.09863 9.67897 11.12963 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.069477 B = 0.006585 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.915462 B = 4251.070351 C = 4337.216314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.687 5.687 13 C 0.062 3.938 14 C -0.079 4.079 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.180 4.180 18 C -0.179 4.179 19 H 0.027 0.973 20 H 0.088 0.912 21 H 0.004 0.996 22 H 0.260 0.740 23 H 0.323 0.677 24 H 0.068 0.932 25 H 0.017 0.983 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -0.164 -13.106 13.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.316 5.316 13 C -0.068 4.068 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.179 4.179 17 C -0.217 4.217 18 C -0.216 4.216 19 H 0.046 0.954 20 H 0.107 0.893 21 H 0.023 0.977 22 H 0.069 0.931 23 H 0.139 0.861 24 H 0.086 0.914 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.242 0.047 -12.781 12.977 hybrid contribution -0.767 -0.313 0.574 1.007 sum 1.475 -0.266 -12.208 12.299 Atomic orbital electron populations 1.22425 1.00809 0.99119 1.00421 1.19158 0.89541 0.94391 0.86615 0.94978 1.21149 1.30123 1.12396 0.89689 0.92034 1.24961 0.95380 0.95235 0.99033 1.69881 1.37402 1.23230 1.23373 0.86563 0.79170 0.79590 0.82049 1.20306 1.21480 1.20393 1.60820 1.57952 1.09177 1.03681 1.21959 0.98289 0.96066 0.90499 1.21118 1.01878 0.96356 0.92344 1.21534 1.03449 0.96917 0.89990 1.21477 1.01313 0.92782 1.02366 1.22996 0.97051 1.01494 1.00171 1.23132 0.92526 1.03065 1.02915 0.95414 0.89319 0.97659 0.93066 0.86121 0.91407 0.96494 0.92465 0.91029 0.93052 0.90863 0.92322 0.89032 0.89213 0.89247 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.94 37.16 0.33 -3.83 16 2 C 0.21 5.45 2.57 -68.87 -0.18 5.27 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -14.02 8.84 -34.44 -0.30 -14.32 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.16 11.32 55.43 0.63 -25.53 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.69 -15.06 6.23 -107.96 -0.67 -15.73 16 13 C 0.06 1.13 4.49 -3.82 -0.02 1.12 16 14 C -0.08 -1.20 5.66 -26.73 -0.15 -1.35 16 15 C -0.12 -1.54 2.47 -154.51 -0.38 -1.92 16 16 C -0.12 -1.54 9.49 37.16 0.35 -1.19 16 17 C -0.18 -2.02 9.97 -26.75 -0.27 -2.28 16 18 C -0.18 -2.08 9.82 -26.75 -0.26 -2.34 16 19 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 20 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 21 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.32 6.72 8.47 -39.29 -0.33 6.39 16 24 H 0.07 1.29 6.36 -51.93 -0.33 0.96 16 25 H 0.02 0.32 7.44 -51.93 -0.39 -0.07 16 26 H 0.06 0.84 7.90 -51.93 -0.41 0.42 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 29 H 0.07 1.02 5.58 -51.93 -0.29 0.73 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 LS Contribution 273.86 15.07 4.13 4.13 Total: -1.00 -28.67 273.86 -7.67 -36.34 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.76 Total: 3.43 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -0.97 Total: -19.41 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.05 Total: -41.26 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.67 -7.67 -36.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379323297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.403 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds