Wall clock time and date at job start Mon Mar 30 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46902 * 2 1 4 4 C 1.50696 * 109.47097 * 119.99695 * 2 1 3 5 5 H 1.08000 * 120.00365 * 119.99975 * 4 2 1 6 6 C 1.37876 * 120.00078 * 300.00459 * 4 2 1 7 7 N 1.31518 * 120.00156 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47014 * 60.00191 * 8 6 4 10 10 H 1.48502 * 109.46896 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47307 * 300.00072 * 8 6 4 12 12 N 1.46896 * 109.47672 * 240.00139 * 2 1 3 13 13 C 1.46900 * 111.00303 * 84.99463 * 12 2 1 14 14 C 1.52998 * 109.47115 * 180.02562 * 13 12 2 15 15 C 1.53006 * 109.47150 * 180.02562 * 14 13 12 16 16 C 1.53001 * 115.56089 * 34.30745 * 15 14 13 17 17 C 1.53000 * 117.49776 * 180.02562 * 15 14 13 18 18 C 1.52997 * 117.49537 * 248.62494 * 15 14 13 19 19 H 1.08997 * 109.46978 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47164 * 300.00134 * 1 2 3 21 21 H 1.09007 * 109.46793 * 59.99891 * 1 2 3 22 22 H 0.96999 * 119.99616 * 180.02562 * 7 6 4 23 23 H 1.00909 * 110.99685 * 321.04438 * 12 2 1 24 24 H 1.08998 * 109.46521 * 60.00824 * 13 12 2 25 25 H 1.09000 * 109.47398 * 300.00577 * 13 12 2 26 26 H 1.08994 * 109.47409 * 60.00462 * 14 13 12 27 27 H 1.09000 * 109.47170 * 300.00362 * 14 13 12 28 28 H 1.08996 * 109.47111 * 205.68891 * 16 15 14 29 29 H 1.09000 * 109.47300 * 325.69419 * 16 15 14 30 30 H 1.09004 * 109.46610 * 85.68977 * 16 15 14 31 31 H 1.08990 * 117.49990 * 359.97438 * 17 15 14 32 32 H 1.09004 * 117.49237 * 214.97568 * 17 15 14 33 33 H 1.08999 * 117.49685 * 145.02116 * 18 15 14 34 34 H 1.08997 * 117.50044 * 359.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1207 4.0083 10 1 1.8268 -0.4198 5.2204 11 1 1.8258 -2.5201 4.0078 12 7 2.0198 -0.6924 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5952 -0.5332 -3.5744 15 6 2.6612 0.4200 -4.7694 16 6 3.0326 1.8672 -4.4398 17 6 3.1528 -0.1500 -6.1014 18 6 1.6728 0.1875 -5.9138 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 0.7094 1.1618 3.4844 23 1 1.4497 -1.4979 -1.4100 24 1 2.7589 1.0461 -2.1182 25 1 1.0871 0.6163 -2.5526 26 1 1.9186 -1.3565 -3.8030 27 1 3.5906 -0.9272 -3.3689 28 1 2.6265 2.5296 -5.2042 29 1 2.6183 2.1364 -3.4682 30 1 4.1178 1.9665 -4.4122 31 1 3.4296 -1.2039 -6.1263 32 1 3.7412 0.5060 -6.7430 33 1 1.2872 1.0655 -6.4320 34 1 0.9758 -0.6448 -5.8156 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379323297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:56 Heat of formation + Delta-G solvation = -8.120579 kcal Electronic energy + Delta-G solvation = -12558.144036 eV Core-core repulsion = 10490.442505 eV Total energy + Delta-G solvation = -2067.701530 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.49441 -37.61322 -34.67980 -32.05875 -29.47208 -28.12135 -27.22976 -23.73349 -23.16077 -22.12571 -19.68025 -18.30779 -16.83345 -16.46703 -16.09907 -15.81138 -15.01005 -14.62681 -14.13400 -13.92635 -13.55756 -13.21491 -13.10484 -12.83214 -12.65718 -12.52080 -12.27013 -12.17710 -12.03708 -11.89030 -11.76642 -11.10917 -10.82779 -10.48257 -10.40289 -8.96055 -8.09255 -6.21063 1.43893 1.46091 1.53898 2.44782 2.89563 3.18645 3.54262 3.87464 3.96177 4.10422 4.27585 4.39486 4.59839 4.67018 4.75523 4.81442 4.86144 4.93634 4.95245 5.05700 5.09384 5.16177 5.21926 5.31363 5.33654 5.42616 5.48045 5.68870 5.81937 6.27376 6.65681 6.84356 6.94813 7.49118 8.96279 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.069477 B = 0.006585 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.915462 B = 4251.070351 C = 4337.216314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H -0.001 1.001 4 C -0.518 4.518 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.691 5.691 13 C 0.067 3.933 14 C -0.068 4.068 15 C -0.140 4.140 16 C -0.121 4.121 17 C -0.166 4.166 18 C -0.175 4.175 19 H 0.032 0.968 20 H 0.062 0.938 21 H 0.023 0.977 22 H 0.261 0.739 23 H 0.330 0.670 24 H 0.056 0.944 25 H 0.014 0.986 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -0.868 -14.090 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.321 5.321 13 C -0.062 4.062 14 C -0.106 4.106 15 C -0.141 4.141 16 C -0.178 4.178 17 C -0.202 4.202 18 C -0.212 4.212 19 H 0.051 0.949 20 H 0.081 0.919 21 H 0.042 0.958 22 H 0.070 0.930 23 H 0.147 0.853 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.513 -0.664 -13.787 14.030 hybrid contribution -0.850 -0.068 0.832 1.192 sum 1.663 -0.732 -12.954 13.081 Atomic orbital electron populations 1.22230 1.00016 0.99245 0.99980 1.18940 0.90063 0.92657 0.87791 0.98277 1.21449 1.30548 1.12549 0.91123 0.92701 1.25762 0.95428 0.95898 1.02002 1.70011 1.38040 1.24283 1.24087 0.85532 0.78625 0.78671 0.78283 1.19902 1.20895 1.19545 1.60701 1.57759 1.09788 1.03830 1.21966 0.98030 0.95634 0.90614 1.20974 1.01327 0.96609 0.91673 1.21468 1.05984 0.96631 0.89969 1.21447 1.01545 0.93041 1.01752 1.23073 0.96917 1.02016 0.98232 1.23219 0.92845 1.03578 1.01570 0.94854 0.91930 0.95818 0.92965 0.85292 0.92536 0.96790 0.91768 0.91685 0.91478 0.92903 0.91980 0.88483 0.87757 0.88114 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.71 8.94 71.98 0.64 -7.07 16 2 C 0.21 11.25 2.57 44.17 0.11 11.36 16 3 H 0.00 -0.04 7.80 -2.38 -0.02 -0.06 16 4 C -0.52 -29.60 8.84 25.60 0.23 -29.38 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.40 5.30 84.65 0.45 0.85 16 7 N -0.92 -54.31 11.32 21.45 0.24 -54.07 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.69 -30.34 6.23 -495.46 -3.09 -33.43 16 13 C 0.07 2.46 4.49 86.30 0.39 2.85 16 14 C -0.07 -1.98 5.66 30.60 0.17 -1.81 16 15 C -0.14 -3.40 2.47 -52.18 -0.13 -3.53 16 16 C -0.12 -2.90 9.49 71.98 0.68 -2.22 16 17 C -0.17 -3.23 9.97 30.58 0.30 -2.93 16 18 C -0.18 -3.60 9.82 30.58 0.30 -3.30 16 19 H 0.03 1.56 8.13 -2.39 -0.02 1.54 16 20 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 21 H 0.02 1.04 7.45 -2.38 -0.02 1.02 16 22 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 23 H 0.33 13.57 8.47 -89.69 -0.76 12.81 16 24 H 0.06 2.20 6.36 -2.39 -0.02 2.18 16 25 H 0.01 0.52 7.44 -2.39 -0.02 0.50 16 26 H 0.06 1.77 7.90 -2.39 -0.02 1.75 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 1.37 7.90 -2.39 -0.02 1.35 16 29 H 0.05 1.46 5.58 -2.39 -0.01 1.45 16 30 H 0.06 1.40 8.14 -2.38 -0.02 1.39 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.10 1.85 8.05 -2.39 -0.02 1.83 16 34 H 0.09 1.88 8.05 -2.39 -0.02 1.86 16 Total: -1.00 -60.42 273.86 2.63 -57.79 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.30 Total: 18.24 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 3.15 Total: -35.17 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -2.85 Total: -87.49 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -60.42 2.63 -57.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379323297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.666 kcal (2) G-P(sol) polarization free energy of solvation -60.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds