Wall clock time and date at job start Mon Mar 30 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.46990 * 2 1 4 4 C 1.46905 * 111.00366 * 300.55924 * 3 2 1 5 5 C 1.50695 * 109.46964 * 297.08563 * 4 3 2 6 6 H 1.07997 * 120.00551 * 357.90451 * 5 4 3 7 7 C 1.37885 * 119.99828 * 177.91004 * 5 4 3 8 8 N 1.31513 * 119.99891 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00038 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47307 * 89.99718 * 9 7 5 11 11 H 1.48497 * 109.47297 * 210.00120 * 9 7 5 12 12 H 1.48505 * 109.47143 * 330.00118 * 9 7 5 13 13 C 1.46898 * 111.00088 * 64.51406 * 3 2 1 14 14 H 1.08998 * 109.47121 * 296.04883 * 13 3 2 15 15 C 1.53007 * 109.47468 * 176.04546 * 13 3 2 16 16 C 1.53006 * 109.46924 * 56.04735 * 13 3 2 17 17 C 1.53003 * 117.49333 * 248.62372 * 16 13 3 18 18 C 1.53007 * 117.49678 * 180.02562 * 16 13 3 19 19 H 1.09003 * 109.47453 * 64.91377 * 1 2 3 20 20 H 1.08996 * 109.47138 * 184.91743 * 1 2 3 21 21 H 1.09005 * 109.47014 * 304.91213 * 1 2 3 22 22 H 1.09004 * 109.46641 * 240.00636 * 2 1 3 23 23 H 1.08994 * 109.47527 * 119.99922 * 2 1 3 24 24 H 1.09005 * 109.46534 * 57.08046 * 4 3 2 25 25 H 1.08997 * 109.47193 * 177.08143 * 4 3 2 26 26 H 0.96999 * 119.99856 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47217 * 180.02562 * 15 13 3 28 28 H 1.08993 * 109.47073 * 59.99890 * 15 13 3 29 29 H 1.09006 * 109.46586 * 300.00312 * 15 13 3 30 30 H 1.08998 * 115.54971 * 34.33057 * 16 13 3 31 31 H 1.08997 * 117.50609 * 359.97438 * 17 16 13 32 32 H 1.08997 * 117.49882 * 145.02316 * 17 16 13 33 33 H 1.08990 * 117.49534 * 214.97405 * 18 16 13 34 34 H 1.08996 * 117.49981 * 0.02562 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5377 2.1138 -1.1810 5 6 2.0875 1.4699 -2.4275 6 1 2.7575 0.6265 -2.3492 7 6 1.7350 1.9574 -3.6682 8 7 2.2152 1.3958 -4.7561 9 14 0.5756 3.4157 -3.8038 10 1 1.3624 4.6751 -3.8074 11 1 -0.2021 3.3143 -5.0647 12 1 -0.3554 3.4171 -2.6468 13 6 1.6387 2.0780 1.2380 14 1 0.5527 2.1532 1.2929 15 6 2.2481 3.4815 1.2451 16 6 2.1570 1.2908 2.4433 17 6 1.1216 0.6085 3.3395 18 6 1.8600 1.8531 3.8349 19 1 -0.3634 0.4357 -0.9307 20 1 -0.3633 -1.0238 0.0881 21 1 -0.3633 0.5882 0.8428 22 1 1.8932 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 0.4484 2.0840 -1.2067 25 1 1.8717 3.1501 -1.1297 26 1 1.9670 1.7385 -5.6289 27 1 1.9659 3.9955 2.1639 28 1 1.8790 4.0422 0.3865 29 1 3.3342 3.4061 1.1902 30 1 3.1105 0.7830 2.2983 31 1 0.0713 0.7206 3.0708 32 1 1.3938 -0.3486 3.7844 33 1 2.6182 1.7150 4.6057 34 1 1.2951 2.7834 3.8918 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379323378.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:10 Heat of formation + Delta-G solvation = 25.866245 kcal Electronic energy + Delta-G solvation = -13210.997154 eV Core-core repulsion = 11144.769403 eV Total energy + Delta-G solvation = -2066.227751 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.72423 -35.77663 -32.43403 -31.11267 -28.85404 -26.66151 -23.55286 -22.74641 -22.08666 -20.37434 -18.50748 -16.81541 -15.79605 -14.81430 -14.56822 -14.21754 -13.90698 -13.14033 -12.60499 -12.29015 -12.10809 -11.94272 -11.53526 -11.47856 -11.20447 -10.92714 -10.79128 -10.58906 -10.21969 -10.04789 -9.97687 -9.70990 -9.54696 -9.14237 -8.52234 -7.22584 -6.01797 -3.97835 3.29584 3.37076 3.38999 3.99974 4.44498 4.68158 5.00512 5.13375 5.26668 5.32799 5.64144 5.71146 5.75613 5.86035 5.89586 6.00046 6.05370 6.07602 6.19250 6.24754 6.36809 6.45657 6.56042 6.67992 6.74377 6.91856 7.05094 7.15066 7.67662 8.01482 8.17615 8.72438 9.07466 9.60652 11.11490 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048358 B = 0.010324 C = 0.009548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.872341 B = 2711.391467 C = 2931.717217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.063 3.937 3 N -0.520 5.520 4 C 0.155 3.845 5 C -0.504 4.504 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.105 3.895 14 H 0.032 0.968 15 C -0.142 4.142 16 C -0.130 4.130 17 C -0.185 4.185 18 C -0.182 4.182 19 H 0.063 0.937 20 H 0.047 0.953 21 H 0.043 0.957 22 H 0.083 0.917 23 H 0.057 0.943 24 H -0.007 1.007 25 H 0.027 0.973 26 H 0.262 0.738 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 0.852 13.713 14.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.066 4.066 3 N -0.244 5.244 4 C 0.029 3.971 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.004 4.004 14 H 0.050 0.950 15 C -0.199 4.199 16 C -0.148 4.148 17 C -0.222 4.222 18 C -0.220 4.220 19 H 0.082 0.918 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.102 0.898 23 H 0.075 0.925 24 H 0.010 0.990 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.434 0.861 13.480 13.725 hybrid contribution -1.564 0.797 -0.202 1.767 sum -3.998 1.658 13.278 13.965 Atomic orbital electron populations 1.22363 0.99638 1.00692 1.01698 1.21962 0.91965 0.90963 1.01662 1.62204 1.59202 1.01915 1.01038 1.20281 0.93514 0.94524 0.88825 1.21047 1.28349 1.16722 0.88113 0.90189 1.24891 0.96009 0.96673 0.95797 1.69894 1.45003 1.41585 0.97674 0.86917 0.81789 0.83800 0.77619 1.20177 1.21281 1.19276 1.21142 0.96167 0.93415 0.89632 0.95045 1.21840 1.02009 0.95449 1.00648 1.22316 1.00031 1.02127 0.90368 1.22995 0.97826 0.96460 1.04924 1.22905 1.03625 0.97684 0.97783 0.91802 0.93440 0.93839 0.89845 0.92487 0.98988 0.95520 0.92763 0.93304 0.92335 0.91836 0.87276 0.89271 0.89258 0.89200 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 9.19 37.16 0.34 -3.01 16 2 C 0.06 1.22 5.56 -3.83 -0.02 1.20 16 3 N -0.52 -10.91 4.60 -228.08 -1.05 -11.96 16 4 C 0.15 3.76 3.26 -4.98 -0.02 3.74 16 5 C -0.50 -14.33 9.01 -34.44 -0.31 -14.64 16 6 H 0.08 2.48 7.21 -52.49 -0.38 2.10 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 9 Si 0.87 21.68 27.51 -169.99 -4.68 17.00 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.44 6.48 56.52 0.37 -6.08 16 13 C 0.11 1.83 1.90 -67.71 -0.13 1.70 16 14 H 0.03 0.57 6.27 -51.93 -0.33 0.24 16 15 C -0.14 -2.33 8.82 37.16 0.33 -2.00 16 16 C -0.13 -1.90 3.73 -90.61 -0.34 -2.23 16 17 C -0.19 -2.33 10.05 -26.75 -0.27 -2.60 16 18 C -0.18 -2.19 9.73 -26.75 -0.26 -2.45 16 19 H 0.06 1.31 6.61 -51.93 -0.34 0.97 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.04 0.73 5.89 -51.93 -0.31 0.42 16 22 H 0.08 1.83 6.71 -51.93 -0.35 1.48 16 23 H 0.06 0.98 6.66 -51.93 -0.35 0.64 16 24 H -0.01 -0.18 5.16 -51.93 -0.27 -0.45 16 25 H 0.03 0.66 5.50 -51.93 -0.29 0.37 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.05 0.67 7.29 -51.93 -0.38 0.29 16 28 H 0.06 1.03 6.26 -51.93 -0.33 0.71 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.11 1.67 8.09 -51.93 -0.42 1.25 16 31 H 0.09 1.14 7.57 -51.93 -0.39 0.75 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.05 7.61 -51.93 -0.40 0.65 16 LS Contribution 261.16 15.07 3.94 3.94 Total: -1.00 -29.66 261.16 -7.16 -36.82 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.37 Total: -0.35 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -0.77 Total: -18.43 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: -0.27 Total: -38.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.68 Total: 17.00 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.66 -7.16 -36.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379323378.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.682 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds