Wall clock time and date at job start Mon Mar 30 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.46990 * 2 1 4 4 C 1.46905 * 111.00366 * 300.55924 * 3 2 1 5 5 C 1.50695 * 109.46964 * 297.08563 * 4 3 2 6 6 H 1.07997 * 120.00551 * 357.90451 * 5 4 3 7 7 C 1.37885 * 119.99828 * 177.91004 * 5 4 3 8 8 N 1.31513 * 119.99891 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00038 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47307 * 89.99718 * 9 7 5 11 11 H 1.48497 * 109.47297 * 210.00120 * 9 7 5 12 12 H 1.48505 * 109.47143 * 330.00118 * 9 7 5 13 13 C 1.46898 * 111.00088 * 64.51406 * 3 2 1 14 14 H 1.08998 * 109.47121 * 296.04883 * 13 3 2 15 15 C 1.53007 * 109.47468 * 176.04546 * 13 3 2 16 16 C 1.53006 * 109.46924 * 56.04735 * 13 3 2 17 17 C 1.53003 * 117.49333 * 248.62372 * 16 13 3 18 18 C 1.53007 * 117.49678 * 180.02562 * 16 13 3 19 19 H 1.09003 * 109.47453 * 64.91377 * 1 2 3 20 20 H 1.08996 * 109.47138 * 184.91743 * 1 2 3 21 21 H 1.09005 * 109.47014 * 304.91213 * 1 2 3 22 22 H 1.09004 * 109.46641 * 240.00636 * 2 1 3 23 23 H 1.08994 * 109.47527 * 119.99922 * 2 1 3 24 24 H 1.09005 * 109.46534 * 57.08046 * 4 3 2 25 25 H 1.08997 * 109.47193 * 177.08143 * 4 3 2 26 26 H 0.96999 * 119.99856 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47217 * 180.02562 * 15 13 3 28 28 H 1.08993 * 109.47073 * 59.99890 * 15 13 3 29 29 H 1.09006 * 109.46586 * 300.00312 * 15 13 3 30 30 H 1.08998 * 115.54971 * 34.33057 * 16 13 3 31 31 H 1.08997 * 117.50609 * 359.97438 * 17 16 13 32 32 H 1.08997 * 117.49882 * 145.02316 * 17 16 13 33 33 H 1.08990 * 117.49534 * 214.97405 * 18 16 13 34 34 H 1.08996 * 117.49981 * 0.02562 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5377 2.1138 -1.1810 5 6 2.0875 1.4699 -2.4275 6 1 2.7575 0.6265 -2.3492 7 6 1.7350 1.9574 -3.6682 8 7 2.2152 1.3958 -4.7561 9 14 0.5756 3.4157 -3.8038 10 1 1.3624 4.6751 -3.8074 11 1 -0.2021 3.3143 -5.0647 12 1 -0.3554 3.4171 -2.6468 13 6 1.6387 2.0780 1.2380 14 1 0.5527 2.1532 1.2929 15 6 2.2481 3.4815 1.2451 16 6 2.1570 1.2908 2.4433 17 6 1.1216 0.6085 3.3395 18 6 1.8600 1.8531 3.8349 19 1 -0.3634 0.4357 -0.9307 20 1 -0.3633 -1.0238 0.0881 21 1 -0.3633 0.5882 0.8428 22 1 1.8932 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 0.4484 2.0840 -1.2067 25 1 1.8717 3.1501 -1.1297 26 1 1.9670 1.7385 -5.6289 27 1 1.9659 3.9955 2.1639 28 1 1.8790 4.0422 0.3865 29 1 3.3342 3.4061 1.1902 30 1 3.1105 0.7830 2.2983 31 1 0.0713 0.7206 3.0708 32 1 1.3938 -0.3486 3.7844 33 1 2.6182 1.7150 4.6057 34 1 1.2951 2.7834 3.8918 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379323378.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:10 Heat of formation + Delta-G solvation = 6.591555 kcal Electronic energy + Delta-G solvation = -13211.832968 eV Core-core repulsion = 11144.769403 eV Total energy + Delta-G solvation = -2067.063564 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.10456 -37.12469 -34.60150 -32.50671 -30.71055 -28.32986 -25.17210 -24.28283 -23.05912 -21.94715 -19.93710 -18.92741 -17.23033 -16.56396 -16.01963 -15.78858 -15.39240 -14.68742 -14.52171 -13.80500 -13.60013 -13.40925 -13.13930 -12.89886 -12.58609 -12.48634 -12.31671 -12.15475 -11.87844 -11.60381 -11.52292 -11.31358 -11.04039 -10.75123 -10.66657 -8.88228 -8.27015 -6.28585 1.32796 1.33859 1.44360 2.34005 2.95801 3.06568 3.27778 3.85530 4.10867 4.17199 4.24006 4.41874 4.45756 4.55892 4.67171 4.68697 4.70546 4.82505 4.92388 5.01305 5.05478 5.12203 5.19085 5.30462 5.33207 5.34064 5.41828 5.46670 5.63313 6.06808 6.47751 6.75263 6.78942 7.34462 8.89764 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048358 B = 0.010324 C = 0.009548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.872341 B = 2711.391467 C = 2931.717217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 N -0.537 5.537 4 C 0.167 3.833 5 C -0.509 4.509 6 H 0.037 0.963 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.941 3.059 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.252 1.252 13 C 0.106 3.894 14 H 0.031 0.969 15 C -0.141 4.141 16 C -0.152 4.152 17 C -0.178 4.178 18 C -0.162 4.162 19 H 0.033 0.967 20 H 0.069 0.931 21 H 0.060 0.940 22 H 0.045 0.955 23 H 0.082 0.918 24 H -0.009 1.009 25 H 0.029 0.971 26 H 0.266 0.734 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.223 1.954 16.127 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.063 4.063 3 N -0.261 5.261 4 C 0.040 3.960 5 C -0.547 4.547 6 H 0.055 0.945 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.765 3.235 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.176 1.176 13 C -0.003 4.003 14 H 0.049 0.951 15 C -0.198 4.198 16 C -0.170 4.170 17 C -0.215 4.215 18 C -0.199 4.199 19 H 0.052 0.948 20 H 0.088 0.912 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.008 0.992 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.704 1.958 15.923 16.465 hybrid contribution -1.090 0.364 -0.903 1.461 sum -4.794 2.322 15.020 15.936 Atomic orbital electron populations 1.22253 0.98209 1.02220 1.00737 1.21892 0.93114 0.90249 1.01002 1.62102 1.59852 1.02523 1.01586 1.19996 0.92932 0.94439 0.88588 1.21272 1.27468 1.15602 0.90374 0.94515 1.25806 0.97929 0.99951 0.95265 1.70050 1.46946 1.43672 0.98408 0.85797 0.79674 0.79867 0.78154 1.18969 1.20758 1.17635 1.21225 0.96260 0.93991 0.88779 0.95087 1.21846 1.01402 0.95031 1.01530 1.22114 1.00401 1.03888 0.90639 1.23075 0.97246 0.97550 1.03608 1.23006 1.03356 0.97750 0.95772 0.94802 0.91179 0.92092 0.93639 0.89929 0.99176 0.95302 0.92556 0.90171 0.93969 0.92585 0.88325 0.89256 0.87874 0.87422 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.15 9.19 71.98 0.66 -5.49 16 2 C 0.07 2.55 5.56 86.30 0.48 3.03 16 3 N -0.54 -22.47 4.60 -875.51 -4.02 -26.49 16 4 C 0.17 8.16 3.26 85.55 0.28 8.44 16 5 C -0.51 -29.94 9.01 25.60 0.23 -29.71 16 6 H 0.04 2.41 7.21 -2.91 -0.02 2.39 16 7 C 0.01 0.43 5.47 84.66 0.46 0.90 16 8 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 9 Si 0.94 44.87 27.51 68.60 1.89 46.76 16 10 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.25 -11.31 6.48 99.48 0.64 -10.66 16 13 C 0.11 3.47 1.90 44.92 0.09 3.56 16 14 H 0.03 1.04 6.27 -2.39 -0.01 1.02 16 15 C -0.14 -4.33 8.82 71.98 0.63 -3.70 16 16 C -0.15 -4.04 3.73 -10.79 -0.04 -4.08 16 17 C -0.18 -3.83 10.05 30.58 0.31 -3.52 16 18 C -0.16 -3.22 9.73 30.58 0.30 -2.93 16 19 H 0.03 1.37 6.61 -2.39 -0.02 1.35 16 20 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 21 H 0.06 1.91 5.89 -2.38 -0.01 1.89 16 22 H 0.05 2.09 6.71 -2.39 -0.02 2.08 16 23 H 0.08 2.77 6.66 -2.39 -0.02 2.75 16 24 H -0.01 -0.46 5.16 -2.38 -0.01 -0.47 16 25 H 0.03 1.40 5.50 -2.39 -0.01 1.39 16 26 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 27 H 0.08 1.93 7.29 -2.39 -0.02 1.91 16 28 H 0.04 1.41 6.26 -2.39 -0.01 1.40 16 29 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.10 2.85 8.09 -2.39 -0.02 2.83 16 31 H 0.09 1.95 7.57 -2.39 -0.02 1.93 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 1.83 7.61 -2.39 -0.02 1.81 16 Total: -1.00 -65.47 261.16 2.56 -62.91 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.00 Total: 10.33 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 3.40 Total: -33.49 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -3.72 Total: -86.52 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.89 Total: 46.76 kcal Total: -65.47 2.56 -62.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379323378.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.503 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds