Wall clock time and date at job start Mon Mar 30 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47279 * 2 1 4 4 C 1.52999 * 109.47404 * 119.99921 * 2 1 3 5 5 N 1.46897 * 115.55213 * 148.81756 * 4 2 1 6 6 C 1.46900 * 111.00370 * 293.74120 * 5 4 2 7 7 H 1.08996 * 109.47079 * 34.22371 * 6 5 4 8 8 C 1.53002 * 109.46770 * 274.22341 * 6 5 4 9 9 C 1.50695 * 109.47436 * 154.22566 * 6 5 4 10 10 H 1.08000 * 119.99932 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99992 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00051 * 0.02562 * 11 9 6 13 13 Si 1.86802 * 119.99758 * 179.97438 * 11 9 6 14 14 H 1.48492 * 109.47476 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47096 * 120.00445 * 13 11 9 16 16 H 1.48504 * 109.47164 * 240.00081 * 13 11 9 17 17 C 1.52999 * 117.49623 * 3.11744 * 4 2 1 18 18 C 1.53001 * 60.00134 * 252.50566 * 17 4 2 19 19 H 1.09001 * 109.47057 * 301.21032 * 1 2 3 20 20 H 1.09002 * 109.47056 * 181.21685 * 1 2 3 21 21 H 1.09001 * 109.47030 * 61.21333 * 1 2 3 22 22 H 1.08998 * 109.47062 * 240.00400 * 2 1 3 23 23 H 1.09005 * 109.46944 * 60.00508 * 3 2 1 24 24 H 1.08997 * 109.47503 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47384 * 300.00495 * 3 2 1 26 26 H 1.00897 * 110.99697 * 57.69305 * 5 4 2 27 27 H 1.08996 * 109.47344 * 299.99868 * 8 6 5 28 28 H 1.09005 * 109.46973 * 59.99979 * 8 6 5 29 29 H 1.09004 * 109.47237 * 179.97438 * 8 6 5 30 30 H 0.97002 * 119.99870 * 180.02562 * 12 11 9 31 31 H 1.08996 * 117.50301 * 359.97438 * 17 4 2 32 32 H 1.08997 * 117.50315 * 145.02171 * 17 4 2 33 33 H 1.08994 * 117.50113 * 252.51076 * 18 17 4 34 34 H 1.09001 * 117.51609 * 107.47775 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.3202 -1.4252 1.0961 6 6 3.1923 -2.5539 0.1647 7 1 2.4776 -2.2999 -0.6180 8 6 2.7004 -3.7880 0.9237 9 6 4.5337 -2.8476 -0.4559 10 1 5.3951 -2.2547 -0.1859 11 6 4.6614 -3.8732 -1.3686 12 7 3.6124 -4.5948 -1.6978 13 14 6.3241 -4.2367 -2.1385 14 1 7.3346 -3.2883 -1.6051 15 1 6.7286 -5.6272 -1.8093 16 1 6.2310 -4.0842 -3.6127 17 6 0.9979 -1.3440 2.1803 18 6 1.7451 -0.0785 2.6060 19 1 -0.3633 0.5325 0.8789 20 1 -0.3633 -1.0275 0.0218 21 1 -0.3633 0.4949 -0.9007 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8901 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 4.0477 -0.7921 0.7993 27 1 3.4151 -4.0420 1.7064 28 1 1.7301 -3.5756 1.3726 29 1 2.6050 -4.6255 0.2325 30 1 3.7023 -5.3166 -2.3396 31 1 -0.0511 -1.2396 1.9032 32 1 1.2620 -2.2763 2.6795 33 1 2.5008 -0.1783 3.3851 34 1 1.1880 0.8584 2.6086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382004414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:11 Heat of formation + Delta-G solvation = 11.743405 kcal Electronic energy + Delta-G solvation = -13232.304597 eV Core-core repulsion = 11165.464434 eV Total energy + Delta-G solvation = -2066.840163 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.69204 -34.41418 -32.41137 -31.43542 -27.92162 -26.76289 -25.09344 -22.35930 -21.66909 -20.18630 -17.71094 -16.59955 -15.71239 -14.78062 -14.42169 -13.69902 -13.47805 -12.76064 -12.59708 -12.27213 -11.95765 -11.62545 -11.26582 -11.02701 -10.91578 -10.79390 -10.65886 -10.52165 -10.22306 -10.06052 -10.02787 -9.66931 -8.92035 -8.71863 -8.44908 -7.23066 -5.99949 -4.06237 3.29367 3.37288 3.41524 4.34826 4.44550 5.08980 5.15901 5.31754 5.34274 5.45172 5.69488 5.79520 5.90143 6.02143 6.09995 6.16164 6.24714 6.30155 6.36150 6.58518 6.63241 6.73620 6.80070 7.00787 7.24985 7.32809 7.60744 7.82003 7.97050 8.32025 8.44801 8.74616 9.05764 9.59538 11.05999 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045169 B = 0.010053 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.738865 B = 2784.502402 C = 2923.837098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.138 4.138 4 C 0.057 3.943 5 N -0.655 5.655 6 C 0.214 3.786 7 H 0.007 0.993 8 C -0.127 4.127 9 C -0.518 4.518 10 H 0.059 0.941 11 C 0.062 3.938 12 N -0.889 5.889 13 Si 0.894 3.106 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.170 4.170 18 C -0.173 4.173 19 H 0.050 0.950 20 H 0.058 0.942 21 H 0.047 0.953 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.333 0.667 27 H 0.027 0.973 28 H 0.011 0.989 29 H 0.078 0.922 30 H 0.259 0.741 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 7.991 3.758 10.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.195 4.195 4 C -0.036 4.036 5 N -0.285 5.285 6 C 0.107 3.893 7 H 0.024 0.976 8 C -0.185 4.185 9 C -0.557 4.557 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.528 5.528 13 Si 0.722 3.278 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.208 4.208 18 C -0.211 4.211 19 H 0.069 0.931 20 H 0.077 0.923 21 H 0.066 0.934 22 H 0.100 0.900 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.151 0.849 27 H 0.046 0.954 28 H 0.030 0.970 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.889 7.426 4.200 9.833 hybrid contribution 0.848 0.104 -1.322 1.574 sum -4.041 7.529 2.878 9.017 Atomic orbital electron populations 1.21889 0.95784 1.01603 1.00636 1.21148 0.95306 0.95823 0.98933 1.21763 1.01098 0.95979 1.00707 1.21433 0.93580 0.99248 0.89332 1.60640 1.02530 1.11140 1.54175 1.19061 0.95869 0.86300 0.88032 0.97557 1.21785 0.96208 1.01160 0.99339 1.21349 0.94814 1.16244 1.23313 0.92323 1.24906 0.96624 0.95956 0.96482 1.69916 1.28787 1.20631 1.33461 0.86503 0.84212 0.78186 0.78864 1.19784 1.21021 1.21131 1.23188 0.96494 0.97263 1.03808 1.22976 1.03308 0.96082 0.98725 0.93101 0.92343 0.93396 0.90047 0.93058 0.92778 0.93400 0.84918 0.95394 0.96973 0.90377 0.93057 0.89211 0.88575 0.89067 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 7.77 37.16 0.29 -1.78 16 2 C -0.09 -1.55 2.94 -90.62 -0.27 -1.82 16 3 C -0.14 -2.00 8.97 37.16 0.33 -1.66 16 4 C 0.06 1.04 1.75 -131.60 -0.23 0.81 16 5 N -0.65 -14.28 6.42 -94.25 -0.60 -14.88 16 6 C 0.21 5.47 2.46 -68.87 -0.17 5.30 16 7 H 0.01 0.19 6.27 -51.93 -0.33 -0.14 16 8 C -0.13 -3.21 9.05 37.16 0.34 -2.88 16 9 C -0.52 -14.36 8.59 -34.44 -0.30 -14.65 16 10 H 0.06 1.61 7.61 -52.49 -0.40 1.21 16 11 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 12 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 13 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.17 -2.90 8.31 -26.73 -0.22 -3.13 16 18 C -0.17 -2.72 9.34 -26.73 -0.25 -2.97 16 19 H 0.05 0.67 7.29 -51.93 -0.38 0.29 16 20 H 0.06 0.90 7.17 -51.93 -0.37 0.53 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.08 1.64 6.56 -51.93 -0.34 1.30 16 23 H 0.05 0.67 6.96 -51.93 -0.36 0.31 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.33 7.17 8.29 -39.29 -0.33 6.85 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.01 0.27 5.68 -51.93 -0.30 -0.03 16 29 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.09 1.38 5.81 -51.93 -0.30 1.08 16 32 H 0.10 1.78 6.77 -51.93 -0.35 1.43 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.14 7.09 -51.93 -0.37 0.77 16 LS Contribution 263.68 15.07 3.97 3.97 Total: -1.00 -28.17 263.68 -6.98 -35.15 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.38 Total: 5.45 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -0.57 Total: -21.15 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.02 Total: -39.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.17 -6.98 -35.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382004414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.897 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds