Wall clock time and date at job start Mon Mar 30 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47279 * 2 1 4 4 C 1.52999 * 109.47404 * 119.99921 * 2 1 3 5 5 N 1.46897 * 115.55213 * 148.81756 * 4 2 1 6 6 C 1.46900 * 111.00370 * 293.74120 * 5 4 2 7 7 H 1.08996 * 109.47079 * 34.22371 * 6 5 4 8 8 C 1.53002 * 109.46770 * 274.22341 * 6 5 4 9 9 C 1.50695 * 109.47436 * 154.22566 * 6 5 4 10 10 H 1.08000 * 119.99932 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99992 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00051 * 0.02562 * 11 9 6 13 13 Si 1.86802 * 119.99758 * 179.97438 * 11 9 6 14 14 H 1.48492 * 109.47476 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47096 * 120.00445 * 13 11 9 16 16 H 1.48504 * 109.47164 * 240.00081 * 13 11 9 17 17 C 1.52999 * 117.49623 * 3.11744 * 4 2 1 18 18 C 1.53001 * 60.00134 * 252.50566 * 17 4 2 19 19 H 1.09001 * 109.47057 * 301.21032 * 1 2 3 20 20 H 1.09002 * 109.47056 * 181.21685 * 1 2 3 21 21 H 1.09001 * 109.47030 * 61.21333 * 1 2 3 22 22 H 1.08998 * 109.47062 * 240.00400 * 2 1 3 23 23 H 1.09005 * 109.46944 * 60.00508 * 3 2 1 24 24 H 1.08997 * 109.47503 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47384 * 300.00495 * 3 2 1 26 26 H 1.00897 * 110.99697 * 57.69305 * 5 4 2 27 27 H 1.08996 * 109.47344 * 299.99868 * 8 6 5 28 28 H 1.09005 * 109.46973 * 59.99979 * 8 6 5 29 29 H 1.09004 * 109.47237 * 179.97438 * 8 6 5 30 30 H 0.97002 * 119.99870 * 180.02562 * 12 11 9 31 31 H 1.08996 * 117.50301 * 359.97438 * 17 4 2 32 32 H 1.08997 * 117.50315 * 145.02171 * 17 4 2 33 33 H 1.08994 * 117.50113 * 252.51076 * 18 17 4 34 34 H 1.09001 * 117.51609 * 107.47775 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.3202 -1.4252 1.0961 6 6 3.1923 -2.5539 0.1647 7 1 2.4776 -2.2999 -0.6180 8 6 2.7004 -3.7880 0.9237 9 6 4.5337 -2.8476 -0.4559 10 1 5.3951 -2.2547 -0.1859 11 6 4.6614 -3.8732 -1.3686 12 7 3.6124 -4.5948 -1.6978 13 14 6.3241 -4.2367 -2.1385 14 1 7.3346 -3.2883 -1.6051 15 1 6.7286 -5.6272 -1.8093 16 1 6.2310 -4.0842 -3.6127 17 6 0.9979 -1.3440 2.1803 18 6 1.7451 -0.0785 2.6060 19 1 -0.3633 0.5325 0.8789 20 1 -0.3633 -1.0275 0.0218 21 1 -0.3633 0.4949 -0.9007 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8901 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 4.0477 -0.7921 0.7993 27 1 3.4151 -4.0420 1.7064 28 1 1.7301 -3.5756 1.3726 29 1 2.6050 -4.6255 0.2325 30 1 3.7023 -5.3166 -2.3396 31 1 -0.0511 -1.2396 1.9032 32 1 1.2620 -2.2763 2.6795 33 1 2.5008 -0.1783 3.3851 34 1 1.1880 0.8584 2.6086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382004414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:11 Heat of formation + Delta-G solvation = -5.714097 kcal Electronic energy + Delta-G solvation = -13233.061611 eV Core-core repulsion = 11165.464434 eV Total energy + Delta-G solvation = -2067.597177 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.12890 -36.33730 -33.87749 -33.24761 -29.75714 -27.99732 -27.23869 -23.72252 -22.99738 -22.13567 -19.19611 -18.56675 -17.20849 -16.78204 -15.94614 -15.41071 -14.92247 -14.36356 -14.03314 -13.85482 -13.49454 -13.05967 -12.98191 -12.87252 -12.59893 -12.36421 -12.24539 -12.12506 -11.95153 -11.81315 -11.63959 -11.17782 -10.75147 -10.57383 -10.32224 -9.00220 -8.13143 -6.27242 1.38898 1.40670 1.52461 2.40124 3.01995 3.14979 3.54503 3.86673 4.04756 4.17969 4.43767 4.53032 4.64888 4.78655 4.81109 4.86455 4.94515 4.99792 5.06304 5.12890 5.16101 5.27352 5.28930 5.44496 5.45098 5.50109 5.55913 5.72873 5.92601 6.24104 6.50035 6.85540 7.03959 7.43114 8.92221 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045169 B = 0.010053 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.738865 B = 2784.502402 C = 2923.837098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.132 4.132 4 C 0.028 3.972 5 N -0.657 5.657 6 C 0.224 3.776 7 H -0.024 1.024 8 C -0.114 4.114 9 C -0.539 4.539 10 H 0.056 0.944 11 C 0.013 3.987 12 N -0.917 5.917 13 Si 0.960 3.040 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.176 4.176 18 C -0.142 4.142 19 H 0.075 0.925 20 H 0.043 0.957 21 H 0.060 0.940 22 H 0.037 0.963 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.331 0.669 27 H 0.020 0.980 28 H 0.029 0.971 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 9.440 4.392 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.189 4.189 4 C -0.064 4.064 5 N -0.286 5.286 6 C 0.116 3.884 7 H -0.006 1.006 8 C -0.173 4.173 9 C -0.577 4.577 10 H 0.074 0.926 11 C -0.186 4.186 12 N -0.557 5.557 13 Si 0.786 3.214 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.213 4.213 18 C -0.180 4.180 19 H 0.093 0.907 20 H 0.062 0.938 21 H 0.079 0.921 22 H 0.056 0.944 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.148 0.852 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.108 8.889 4.848 11.341 hybrid contribution 0.877 -0.330 -1.493 1.763 sum -4.231 8.559 3.355 10.120 Atomic orbital electron populations 1.21844 0.93796 1.01271 1.02465 1.21066 0.96963 0.96709 0.96273 1.21721 1.00389 0.94412 1.02410 1.21643 0.92545 1.00935 0.91315 1.60526 1.04627 1.10947 1.52479 1.18785 0.94176 0.87654 0.87830 1.00617 1.21617 0.96963 1.00320 0.98389 1.21677 0.95648 1.16488 1.23901 0.92615 1.25715 1.00188 0.95755 0.96932 1.70041 1.30722 1.20994 1.33894 0.85472 0.79925 0.78011 0.77998 1.19124 1.20610 1.20559 1.23244 0.97313 0.97405 1.03323 1.23039 1.02320 0.96550 0.96067 0.90651 0.93788 0.92125 0.94422 0.90849 0.93910 0.92135 0.85155 0.96099 0.95188 0.92884 0.92920 0.87307 0.90424 0.89169 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 7.77 71.98 0.56 -3.14 16 2 C -0.09 -2.96 2.94 -10.79 -0.03 -2.99 16 3 C -0.13 -3.53 8.97 71.98 0.65 -2.89 16 4 C 0.03 0.99 1.75 3.53 0.01 1.00 16 5 N -0.66 -28.83 6.42 -452.11 -2.90 -31.74 16 6 C 0.22 11.71 2.46 44.17 0.11 11.82 16 7 H -0.02 -1.37 6.27 -2.39 -0.01 -1.38 16 8 C -0.11 -5.95 9.05 71.98 0.65 -5.29 16 9 C -0.54 -30.41 8.59 25.60 0.22 -30.19 16 10 H 0.06 3.10 7.61 -2.91 -0.02 3.08 16 11 C 0.01 0.74 5.30 84.66 0.45 1.19 16 12 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 13 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 C -0.18 -5.69 8.31 30.59 0.25 -5.44 16 18 C -0.14 -4.04 9.34 30.60 0.29 -3.75 16 19 H 0.07 1.68 7.29 -2.39 -0.02 1.66 16 20 H 0.04 1.31 7.17 -2.39 -0.02 1.29 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.04 1.56 6.56 -2.39 -0.02 1.55 16 23 H 0.07 1.63 6.96 -2.38 -0.02 1.62 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.33 14.44 8.29 -89.70 -0.74 13.70 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.03 1.39 5.68 -2.38 -0.01 1.38 16 29 H 0.05 3.01 6.07 -2.39 -0.01 2.99 16 30 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.11 3.08 5.81 -2.39 -0.01 3.07 16 32 H 0.08 2.81 6.77 -2.39 -0.02 2.79 16 33 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.11 2.56 7.09 -2.39 -0.02 2.54 16 Total: -1.00 -60.95 263.68 2.85 -58.10 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.33 Total: 20.62 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.15 Total: -39.67 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -2.66 Total: -85.42 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -60.95 2.85 -58.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382004414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.385 kcal (2) G-P(sol) polarization free energy of solvation -60.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds