Wall clock time and date at job start Mon Mar 30 2020 01:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47580 * 2 1 4 4 N 1.46907 * 109.47008 * 120.00157 * 2 1 3 5 5 C 1.46901 * 110.99858 * 274.99737 * 4 2 1 6 6 C 1.50697 * 109.46721 * 180.02562 * 5 4 2 7 7 H 1.08005 * 120.00244 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00012 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99912 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00296 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47204 * 270.00021 * 10 8 6 12 12 H 1.48501 * 109.47034 * 29.99897 * 10 8 6 13 13 H 1.48497 * 109.47227 * 149.99870 * 10 8 6 14 14 C 1.53001 * 109.47286 * 240.00252 * 2 1 3 15 15 H 1.09001 * 115.54574 * 278.96203 * 14 2 1 16 16 C 1.52994 * 117.49835 * 64.62682 * 14 2 1 17 17 C 1.52992 * 117.50310 * 133.29011 * 14 2 1 18 18 C 1.53006 * 117.49800 * 0.02562 * 17 14 2 19 19 C 1.52997 * 117.50060 * 145.02090 * 17 14 2 20 20 H 1.08996 * 109.46807 * 61.02660 * 1 2 3 21 21 H 1.08997 * 109.46785 * 181.02931 * 1 2 3 22 22 H 1.08997 * 109.46801 * 301.02686 * 1 2 3 23 23 H 1.00900 * 110.99779 * 38.95408 * 4 2 1 24 24 H 1.08995 * 109.46738 * 60.00422 * 5 4 2 25 25 H 1.08996 * 109.46883 * 299.99967 * 5 4 2 26 26 H 0.97000 * 120.00542 * 180.02562 * 9 8 6 27 27 H 1.09003 * 117.49896 * 214.98251 * 16 14 2 28 28 H 1.09001 * 117.49952 * 359.97438 * 16 14 2 29 29 H 1.08994 * 109.47238 * 58.27039 * 18 17 14 30 30 H 1.08996 * 109.47241 * 178.28075 * 18 17 14 31 31 H 1.09001 * 109.46779 * 298.27135 * 18 17 14 32 32 H 1.08997 * 109.47066 * 60.00180 * 19 17 14 33 33 H 1.09003 * 109.47175 * 180.02562 * 19 17 14 34 34 H 1.09004 * 109.47233 * 300.00194 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5216 3.5557 7 1 2.8381 -1.5697 3.4793 8 6 2.7319 0.1351 4.7595 9 7 2.4276 1.4112 4.8527 10 14 3.3585 -0.7874 6.2580 11 1 2.2096 -1.3704 6.9965 12 1 4.2712 -1.8754 5.8237 13 1 4.0928 0.1500 7.1452 14 6 2.0400 -0.7212 -1.2493 15 1 2.0523 -1.8096 -1.1916 16 6 1.7273 -0.0892 -2.6070 17 6 3.1528 -0.0437 -2.0513 18 6 3.6710 1.3030 -1.5425 19 6 4.1974 -0.9457 -2.7116 20 1 -0.3633 0.4978 -0.8990 21 1 -0.3633 -1.0275 0.0185 22 1 -0.3633 0.5297 0.8806 23 1 1.4495 -1.4980 1.4100 24 1 1.0871 0.6162 2.5525 25 1 2.7589 1.0460 2.1182 26 1 2.5288 1.8734 5.6994 27 1 1.5342 -0.7618 -3.4427 28 1 1.1578 0.8402 -2.6103 29 1 4.0459 1.1873 -0.5256 30 1 4.4764 1.6505 -2.1895 31 1 2.8595 2.0308 -1.5499 32 1 3.7049 -1.6183 -3.4138 33 1 4.9232 -0.3314 -3.2446 34 1 4.7087 -1.5300 -1.9465 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388401228.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:20 Heat of formation + Delta-G solvation = -15.104499 kcal Electronic energy + Delta-G solvation = -12718.927457 eV Core-core repulsion = 10650.923081 eV Total energy + Delta-G solvation = -2068.004376 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99215 -36.91133 -34.67379 -31.57786 -29.46381 -28.37491 -27.90523 -24.95766 -23.24900 -21.22287 -19.68210 -18.44440 -16.79847 -16.33084 -15.93263 -15.37496 -14.85152 -14.58283 -14.42720 -13.79957 -13.58237 -13.39921 -13.27289 -13.14292 -12.78863 -12.68123 -12.55252 -12.37370 -12.08604 -12.01777 -11.53195 -11.26300 -10.71600 -10.67478 -10.26889 -9.00544 -8.22694 -6.34001 1.39989 1.41999 1.53842 2.39490 2.86863 3.10200 3.51724 3.84888 3.94373 4.24310 4.27298 4.37003 4.44733 4.53551 4.79542 4.81362 4.85482 4.92948 5.02481 5.07355 5.09567 5.11973 5.16632 5.24428 5.35930 5.37690 5.45043 5.54752 5.63411 6.04159 6.50378 6.76672 6.92610 7.37126 8.88819 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.047094 B = 0.007736 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.409250 B = 3618.512722 C = 3799.121052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 H 0.055 0.945 4 N -0.682 5.682 5 C 0.214 3.786 6 C -0.536 4.536 7 H 0.063 0.937 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.973 3.027 11 H -0.270 1.270 12 H -0.265 1.265 13 H -0.281 1.281 14 C -0.135 4.135 15 H 0.100 0.900 16 C -0.153 4.153 17 C -0.134 4.134 18 C -0.113 4.113 19 C -0.108 4.108 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.031 0.969 23 H 0.333 0.667 24 H -0.039 1.039 25 H -0.007 1.007 26 H 0.265 0.735 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 -3.426 -13.805 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 H 0.074 0.926 4 N -0.311 5.311 5 C 0.087 3.913 6 C -0.574 4.574 7 H 0.081 0.919 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.797 3.203 11 H -0.196 1.196 12 H -0.189 1.189 13 H -0.206 1.206 14 C -0.153 4.153 15 H 0.118 0.882 16 C -0.190 4.190 17 C -0.134 4.134 18 C -0.170 4.170 19 C -0.165 4.165 20 H 0.094 0.906 21 H 0.082 0.918 22 H 0.050 0.950 23 H 0.150 0.850 24 H -0.022 1.022 25 H 0.012 0.988 26 H 0.074 0.926 27 H 0.130 0.870 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.045 -3.193 -13.845 14.208 hybrid contribution -0.734 0.132 1.378 1.566 sum -0.779 -3.061 -12.467 12.861 Atomic orbital electron populations 1.22348 0.96667 1.02197 1.01436 1.21142 0.92752 0.96726 0.89772 0.92646 1.60562 1.56469 1.09952 1.04167 1.19136 0.92662 0.91473 0.88077 1.21574 1.43847 0.97213 0.94799 0.91857 1.25967 0.95589 0.95801 1.02412 1.70094 1.49787 1.10702 1.26913 0.85326 0.78580 0.78261 0.78094 1.19577 1.18932 1.20641 1.22232 1.03516 0.98678 0.90917 0.88187 1.23318 0.96938 1.02763 0.95999 1.21673 0.90931 0.97665 1.03160 1.21303 1.00911 0.94708 1.00047 1.21310 0.97375 0.98337 0.99500 0.90555 0.91785 0.95030 0.85015 1.02183 0.98841 0.92633 0.87016 0.88845 0.94701 0.90866 0.92908 0.91283 0.91357 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.39 9.06 71.98 0.65 -4.74 16 2 C 0.11 3.88 2.58 44.91 0.12 4.00 16 3 H 0.06 2.23 5.73 -2.39 -0.01 2.22 16 4 N -0.68 -30.52 6.24 -495.57 -3.09 -33.61 16 5 C 0.21 11.89 5.24 85.56 0.45 12.33 16 6 C -0.54 -31.47 9.32 25.60 0.24 -31.24 16 7 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 8 C 0.00 0.02 5.46 84.66 0.46 0.48 16 9 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 10 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 C -0.13 -4.01 5.12 -10.80 -0.06 -4.06 16 15 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 16 C -0.15 -3.54 9.08 30.62 0.28 -3.26 16 17 C -0.13 -3.62 2.70 -52.16 -0.14 -3.76 16 18 C -0.11 -3.28 8.37 71.98 0.60 -2.67 16 19 C -0.11 -2.46 9.85 71.98 0.71 -1.75 16 20 H 0.08 2.04 7.57 -2.39 -0.02 2.02 16 21 H 0.06 1.89 8.11 -2.39 -0.02 1.87 16 22 H 0.03 1.15 7.48 -2.39 -0.02 1.13 16 23 H 0.33 14.18 8.45 -89.69 -0.76 13.42 16 24 H -0.04 -2.34 7.45 -2.39 -0.02 -2.36 16 25 H -0.01 -0.40 8.05 -2.39 -0.02 -0.42 16 26 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 27 H 0.11 2.08 8.05 -2.39 -0.02 2.06 16 28 H 0.09 2.10 7.80 -2.39 -0.02 2.08 16 29 H 0.03 1.23 8.00 -2.39 -0.02 1.21 16 30 H 0.07 1.78 7.90 -2.39 -0.02 1.76 16 31 H 0.05 1.49 7.42 -2.39 -0.02 1.47 16 32 H 0.07 1.31 7.90 -2.39 -0.02 1.30 16 33 H 0.07 1.35 7.91 -2.39 -0.02 1.34 16 34 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -64.40 277.40 2.82 -61.57 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.29 Total: 16.92 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 3.31 Total: -34.66 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -2.81 Total: -90.97 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.40 2.82 -61.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388401228.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.469 kcal (2) G-P(sol) polarization free energy of solvation -64.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds