Wall clock time and date at job start Mon Mar 30 2020 02:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47199 * 2 1 4 4 C 1.53001 * 109.47359 * 239.99487 * 2 1 3 5 5 N 1.46502 * 109.46607 * 65.00209 * 4 2 1 6 6 C 1.46494 * 119.99966 * 90.00350 * 5 4 2 7 7 C 1.36942 * 119.99825 * 269.99701 * 5 4 2 8 8 H 1.08001 * 119.99825 * 22.19119 * 7 5 4 9 9 C 1.38802 * 119.99853 * 202.19379 * 7 5 4 10 10 N 1.31620 * 120.00477 * 14.04892 * 9 7 5 11 11 Si 1.86798 * 119.99987 * 194.04949 * 9 7 5 12 12 H 1.48504 * 109.47354 * 90.00146 * 11 9 7 13 13 H 1.48501 * 109.47447 * 209.99799 * 11 9 7 14 14 H 1.48502 * 109.47188 * 330.00202 * 11 9 7 15 15 C 1.53001 * 109.47157 * 119.99533 * 2 1 3 16 16 C 1.53787 * 113.61551 * 279.13970 * 15 2 1 17 17 C 1.53959 * 87.01774 * 220.04437 * 16 15 2 18 18 C 1.53780 * 87.11243 * 25.36308 * 17 16 15 19 19 H 1.09001 * 109.47287 * 60.00572 * 1 2 3 20 20 H 1.09006 * 109.47186 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47250 * 299.99981 * 1 2 3 22 22 H 1.08995 * 109.47107 * 184.99765 * 4 2 1 23 23 H 1.09000 * 109.47254 * 305.00043 * 4 2 1 24 24 H 1.09001 * 109.47600 * 95.12975 * 6 5 4 25 25 H 1.09004 * 109.47047 * 215.12449 * 6 5 4 26 26 H 1.09000 * 109.47299 * 335.12390 * 6 5 4 27 27 H 0.96994 * 120.00523 * 179.97438 * 10 9 7 28 28 H 1.09000 * 112.84836 * 50.33425 * 15 2 1 29 29 H 1.08995 * 113.61009 * 334.56469 * 16 15 2 30 30 H 1.09000 * 113.61402 * 105.47240 * 16 15 2 31 31 H 1.08989 * 113.54203 * 270.80996 * 17 16 15 32 32 H 1.09001 * 113.73998 * 139.93898 * 17 16 15 33 33 H 1.09000 * 113.61765 * 220.08796 * 18 17 16 34 34 H 1.08999 * 113.61582 * 89.18266 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.5428 1.0695 -2.9751 7 6 0.4580 -0.2244 -3.0597 8 1 -0.3426 -0.6969 -2.5098 9 6 0.2761 0.1197 -4.3920 10 7 1.3138 0.4345 -5.1380 11 14 -1.4413 0.1359 -5.1265 12 1 -2.0405 1.4838 -4.9546 13 1 -1.3642 -0.1905 -6.5731 14 1 -2.2847 -0.8724 -4.4357 15 6 2.0400 -0.7212 1.2493 16 6 2.0343 0.1560 2.5125 17 6 3.3855 -0.4898 2.8695 18 6 3.5733 -0.7442 1.3646 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 3.1263 -0.7995 -1.2055 23 1 1.6054 -1.7199 -1.2950 24 1 3.1609 0.6447 -3.7660 25 1 1.9476 1.8883 -3.3794 26 1 3.1823 1.4451 -2.1763 27 1 1.1868 0.6745 -6.0692 28 1 1.5765 -1.6971 1.3934 29 1 2.1024 1.2235 2.3029 30 1 1.2341 -0.0892 3.2108 31 1 3.2899 -1.4022 3.4579 32 1 4.1093 0.2097 3.2877 33 1 4.0137 -1.7151 1.1374 34 1 4.0629 0.0767 0.8407 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398884215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:25 Heat of formation + Delta-G solvation = 25.186365 kcal Electronic energy + Delta-G solvation = -13070.947694 eV Core-core repulsion = 11004.690461 eV Total energy + Delta-G solvation = -2066.257233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.90971 -35.71296 -32.53476 -30.30659 -26.38716 -25.86121 -24.92129 -24.66345 -21.39450 -19.56495 -19.00256 -16.58912 -15.24279 -15.09946 -14.35532 -13.76815 -13.26039 -13.16287 -12.40535 -12.20438 -11.97726 -11.82321 -11.38845 -11.19817 -10.79354 -10.69695 -10.53938 -10.37468 -10.30039 -9.99047 -9.93069 -9.75054 -9.62442 -9.31256 -8.43644 -6.60961 -5.62573 -3.07032 3.42953 3.49269 3.50400 4.57373 4.89219 4.93050 5.00711 5.14925 5.51382 5.64727 5.72874 5.83521 6.00186 6.02024 6.06831 6.09586 6.17126 6.25804 6.38579 6.47645 6.65925 6.73326 6.81657 6.84711 6.90987 7.18121 7.22882 7.47557 7.81553 7.90370 8.50388 9.34443 9.99689 10.49158 11.42380 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060858 B = 0.008845 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.978168 B = 3165.049104 C = 3458.550905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.059 0.941 4 C 0.158 3.842 5 N -0.603 5.603 6 C 0.164 3.836 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.003 4.003 10 N -0.910 5.910 11 Si 0.900 3.100 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.280 1.280 15 C -0.101 4.101 16 C -0.136 4.136 17 C -0.145 4.145 18 C -0.136 4.136 19 H 0.076 0.924 20 H 0.041 0.959 21 H 0.031 0.969 22 H 0.034 0.966 23 H 0.042 0.958 24 H 0.028 0.972 25 H 0.038 0.962 26 H -0.005 1.005 27 H 0.250 0.750 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -0.917 12.285 12.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.078 0.922 4 C 0.031 3.969 5 N -0.326 5.326 6 C 0.019 3.981 7 C -0.376 4.376 8 H 0.089 0.911 9 C -0.201 4.201 10 N -0.556 5.556 11 Si 0.731 3.269 12 H -0.217 1.217 13 H -0.219 1.219 14 H -0.205 1.205 15 C -0.120 4.120 16 C -0.174 4.174 17 C -0.182 4.182 18 C -0.173 4.173 19 H 0.095 0.905 20 H 0.060 0.940 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.014 0.986 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.282 -0.873 12.079 12.323 hybrid contribution -0.926 0.072 -0.490 1.050 sum 1.356 -0.802 11.589 11.695 Atomic orbital electron populations 1.21768 0.95646 1.00752 1.01258 1.21773 0.96192 0.99374 0.94773 0.92238 1.20744 0.96238 0.93899 0.86037 1.43895 1.20475 1.39530 1.28666 1.20745 0.92455 0.91185 0.93692 1.19266 0.89909 1.36231 0.92224 0.91091 1.25003 0.96952 1.02219 0.95937 1.70079 1.27600 1.51492 1.06409 0.86312 0.84535 0.77783 0.78314 1.21652 1.21880 1.20549 1.22562 0.95444 0.98991 0.95013 1.22966 0.96859 0.99589 0.97960 1.22855 0.97875 1.00455 0.97030 1.22899 0.97126 1.01713 0.95560 0.90528 0.94027 0.95020 0.94816 0.93955 0.95347 0.94298 0.98608 0.93947 0.89983 0.90449 0.92262 0.90795 0.92132 0.91952 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.37 37.15 0.31 -2.21 16 2 C -0.10 -1.80 2.32 -90.62 -0.21 -2.01 16 3 H 0.06 1.13 7.98 -51.93 -0.41 0.72 16 4 C 0.16 3.35 5.05 -4.04 -0.02 3.33 16 5 N -0.60 -15.48 2.80 -181.12 -0.51 -15.99 16 6 C 0.16 4.18 8.98 59.84 0.54 4.71 16 7 C -0.25 -6.84 8.17 -15.06 -0.12 -6.96 16 8 H 0.07 1.92 6.73 -52.49 -0.35 1.57 16 9 C 0.00 -0.10 5.08 -17.43 -0.09 -0.19 16 10 N -0.91 -27.21 10.72 55.49 0.59 -26.62 16 11 Si 0.90 22.28 29.58 -169.99 -5.03 17.25 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C -0.10 -1.48 3.11 -89.80 -0.28 -1.76 16 16 C -0.14 -1.75 7.63 -25.82 -0.20 -1.94 16 17 C -0.14 -1.68 8.09 -25.83 -0.21 -1.89 16 18 C -0.14 -1.82 6.66 -25.92 -0.17 -1.99 16 19 H 0.08 1.64 6.06 -51.93 -0.31 1.32 16 20 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.03 0.68 7.26 -51.93 -0.38 0.31 16 23 H 0.04 0.92 8.04 -51.93 -0.42 0.50 16 24 H 0.03 0.78 7.36 -51.93 -0.38 0.40 16 25 H 0.04 1.05 7.31 -51.93 -0.38 0.67 16 26 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 27 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.02 7.99 -51.93 -0.41 0.60 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.78 8.14 -51.94 -0.42 0.36 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 268.04 15.07 4.04 4.04 Total: -1.00 -29.28 268.04 -7.34 -36.62 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.99 Total: -4.40 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -0.45 Total: -10.91 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.09 Total: -42.61 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.28 -7.34 -36.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398884215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.805 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds