Wall clock time and date at job start Mon Mar 30 2020 02:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47199 * 2 1 4 4 C 1.53001 * 109.47359 * 239.99487 * 2 1 3 5 5 N 1.46502 * 109.46607 * 65.00209 * 4 2 1 6 6 C 1.46494 * 119.99966 * 90.00350 * 5 4 2 7 7 C 1.36942 * 119.99825 * 269.99701 * 5 4 2 8 8 H 1.08001 * 119.99825 * 22.19119 * 7 5 4 9 9 C 1.38802 * 119.99853 * 202.19379 * 7 5 4 10 10 N 1.31620 * 120.00477 * 14.04892 * 9 7 5 11 11 Si 1.86798 * 119.99987 * 194.04949 * 9 7 5 12 12 H 1.48504 * 109.47354 * 90.00146 * 11 9 7 13 13 H 1.48501 * 109.47447 * 209.99799 * 11 9 7 14 14 H 1.48502 * 109.47188 * 330.00202 * 11 9 7 15 15 C 1.53001 * 109.47157 * 119.99533 * 2 1 3 16 16 C 1.53787 * 113.61551 * 279.13970 * 15 2 1 17 17 C 1.53959 * 87.01774 * 220.04437 * 16 15 2 18 18 C 1.53780 * 87.11243 * 25.36308 * 17 16 15 19 19 H 1.09001 * 109.47287 * 60.00572 * 1 2 3 20 20 H 1.09006 * 109.47186 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47250 * 299.99981 * 1 2 3 22 22 H 1.08995 * 109.47107 * 184.99765 * 4 2 1 23 23 H 1.09000 * 109.47254 * 305.00043 * 4 2 1 24 24 H 1.09001 * 109.47600 * 95.12975 * 6 5 4 25 25 H 1.09004 * 109.47047 * 215.12449 * 6 5 4 26 26 H 1.09000 * 109.47299 * 335.12390 * 6 5 4 27 27 H 0.96994 * 120.00523 * 179.97438 * 10 9 7 28 28 H 1.09000 * 112.84836 * 50.33425 * 15 2 1 29 29 H 1.08995 * 113.61009 * 334.56469 * 16 15 2 30 30 H 1.09000 * 113.61402 * 105.47240 * 16 15 2 31 31 H 1.08989 * 113.54203 * 270.80996 * 17 16 15 32 32 H 1.09001 * 113.73998 * 139.93898 * 17 16 15 33 33 H 1.09000 * 113.61765 * 220.08796 * 18 17 16 34 34 H 1.08999 * 113.61582 * 89.18266 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.5428 1.0695 -2.9751 7 6 0.4580 -0.2244 -3.0597 8 1 -0.3426 -0.6969 -2.5098 9 6 0.2761 0.1197 -4.3920 10 7 1.3138 0.4345 -5.1380 11 14 -1.4413 0.1359 -5.1265 12 1 -2.0405 1.4838 -4.9546 13 1 -1.3642 -0.1905 -6.5731 14 1 -2.2847 -0.8724 -4.4357 15 6 2.0400 -0.7212 1.2493 16 6 2.0343 0.1560 2.5125 17 6 3.3855 -0.4898 2.8695 18 6 3.5733 -0.7442 1.3646 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 3.1263 -0.7995 -1.2055 23 1 1.6054 -1.7199 -1.2950 24 1 3.1609 0.6447 -3.7660 25 1 1.9476 1.8883 -3.3794 26 1 3.1823 1.4451 -2.1763 27 1 1.1868 0.6745 -6.0692 28 1 1.5765 -1.6971 1.3934 29 1 2.1024 1.2235 2.3029 30 1 1.2341 -0.0892 3.2108 31 1 3.2899 -1.4022 3.4579 32 1 4.1093 0.2097 3.2877 33 1 4.0137 -1.7151 1.1374 34 1 4.0629 0.0767 0.8407 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398884215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:25 Heat of formation + Delta-G solvation = 9.507667 kcal Electronic energy + Delta-G solvation = -13071.627574 eV Core-core repulsion = 11004.690461 eV Total energy + Delta-G solvation = -2066.937112 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.10095 -37.53078 -34.29250 -32.23503 -28.04841 -27.83112 -26.10763 -26.04113 -23.20754 -21.02944 -20.18549 -18.68220 -16.97515 -16.26928 -15.91983 -15.51176 -15.03831 -14.82758 -14.08803 -13.66762 -13.29017 -13.23541 -12.99853 -12.78221 -12.63412 -12.44930 -12.35630 -11.93558 -11.84797 -11.81967 -11.50579 -11.20315 -10.96169 -10.71037 -10.53565 -8.69735 -7.78055 -5.24850 1.45880 1.47249 1.55694 2.53302 3.33634 3.68477 3.85685 3.89025 4.02853 4.10657 4.33215 4.61113 4.67909 4.76879 4.85767 4.94539 4.97228 4.99298 5.05523 5.12771 5.14892 5.17456 5.29417 5.34288 5.50733 5.58970 5.63652 5.69298 5.73745 5.81891 6.37709 7.19749 7.93536 8.37907 9.25461 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060858 B = 0.008845 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.978168 B = 3165.049104 C = 3458.550905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 H 0.048 0.952 4 C 0.156 3.844 5 N -0.619 5.619 6 C 0.179 3.821 7 C -0.247 4.247 8 H 0.076 0.924 9 C -0.062 4.062 10 N -0.944 5.944 11 Si 0.963 3.037 12 H -0.288 1.288 13 H -0.297 1.297 14 H -0.267 1.267 15 C -0.104 4.104 16 C -0.133 4.133 17 C -0.132 4.132 18 C -0.140 4.140 19 H 0.041 0.959 20 H 0.043 0.957 21 H 0.054 0.946 22 H 0.042 0.958 23 H 0.035 0.965 24 H 0.002 0.998 25 H 0.013 0.987 26 H 0.026 0.974 27 H 0.245 0.755 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -1.348 14.316 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 H 0.067 0.933 4 C 0.031 3.969 5 N -0.342 5.342 6 C 0.033 3.967 7 C -0.377 4.377 8 H 0.093 0.907 9 C -0.256 4.256 10 N -0.592 5.592 11 Si 0.792 3.208 12 H -0.215 1.215 13 H -0.223 1.223 14 H -0.192 1.192 15 C -0.123 4.123 16 C -0.170 4.170 17 C -0.169 4.169 18 C -0.177 4.177 19 H 0.061 0.939 20 H 0.062 0.938 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.031 0.969 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.931 -1.320 14.155 14.347 hybrid contribution -0.781 0.183 -1.065 1.333 sum 1.150 -1.137 13.090 13.190 Atomic orbital electron populations 1.21682 0.95856 1.00707 1.00659 1.21562 0.95882 0.98671 0.94784 0.93301 1.20917 0.96830 0.93451 0.85719 1.44163 1.20092 1.40132 1.29831 1.20480 0.91972 0.90318 0.93883 1.19586 0.90808 1.35020 0.92294 0.90679 1.25776 1.00406 1.02883 0.96578 1.70245 1.29442 1.53161 1.06343 0.85305 0.80497 0.77865 0.77103 1.21525 1.22342 1.19200 1.22558 0.96354 0.99291 0.94080 1.22943 0.98149 0.99031 0.96897 1.22810 0.97169 1.01202 0.95715 1.22916 0.95932 1.01676 0.97217 0.93950 0.93751 0.92702 0.93961 0.94644 0.97964 0.96862 0.95506 0.94538 0.89419 0.90867 0.91015 0.89294 0.90965 0.91524 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.37 71.98 0.60 -4.05 16 2 C -0.09 -3.04 2.32 -10.79 -0.03 -3.07 16 3 H 0.05 1.80 7.98 -2.39 -0.02 1.78 16 4 C 0.16 6.51 5.05 86.38 0.44 6.95 16 5 N -0.62 -31.90 2.80 -726.95 -2.04 -33.94 16 6 C 0.18 9.22 8.98 127.77 1.15 10.37 16 7 C -0.25 -13.75 8.17 84.03 0.69 -13.06 16 8 H 0.08 4.05 6.73 -2.91 -0.02 4.03 16 9 C -0.06 -3.59 5.08 84.86 0.43 -3.16 16 10 N -0.94 -57.71 10.72 21.65 0.23 -57.47 16 11 Si 0.96 46.24 29.58 68.60 2.03 48.27 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 13 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 15 C -0.10 -2.78 3.11 -10.26 -0.03 -2.81 16 16 C -0.13 -2.97 7.63 31.18 0.24 -2.73 16 17 C -0.13 -2.59 8.09 31.18 0.25 -2.34 16 18 C -0.14 -3.40 6.66 31.12 0.21 -3.19 16 19 H 0.04 1.78 6.06 -2.39 -0.01 1.76 16 20 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 21 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 22 H 0.04 1.67 7.26 -2.39 -0.02 1.65 16 23 H 0.04 1.51 8.04 -2.39 -0.02 1.49 16 24 H 0.00 0.12 7.36 -2.39 -0.02 0.10 16 25 H 0.01 0.71 7.31 -2.39 -0.02 0.69 16 26 H 0.03 1.18 8.03 -2.39 -0.02 1.16 16 27 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.07 1.72 7.99 -2.39 -0.02 1.70 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -62.36 268.04 5.20 -57.15 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.03 Total: 3.09 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 3.94 Total: -17.10 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -1.80 Total: -91.41 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -62.36 5.20 -57.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398884215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.662 kcal (2) G-P(sol) polarization free energy of solvation -62.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds