Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47038 * 2 1 4 4 C 1.50700 * 109.47260 * 239.99898 * 2 1 3 5 5 H 1.07993 * 120.00197 * 240.00207 * 4 2 1 6 6 C 1.37878 * 119.99625 * 60.00051 * 4 2 1 7 7 N 1.31509 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47245 * 90.00101 * 8 6 4 10 10 H 1.48499 * 109.47066 * 210.00032 * 8 6 4 11 11 H 1.48506 * 109.47050 * 330.00014 * 8 6 4 12 12 N 1.46898 * 109.46931 * 120.00061 * 2 1 3 13 13 C 1.46897 * 111.00254 * 286.05077 * 12 2 1 14 14 C 1.53003 * 115.56238 * 323.39178 * 13 12 2 15 15 C 1.53000 * 117.50282 * 177.70239 * 13 12 2 16 16 C 1.52998 * 117.49951 * 109.07678 * 13 12 2 17 17 C 1.52997 * 117.50109 * 0.02562 * 16 13 12 18 18 C 1.52996 * 117.51800 * 214.97248 * 16 13 12 19 19 H 1.08996 * 109.47425 * 173.19461 * 1 2 3 20 20 H 1.09002 * 109.47143 * 293.18971 * 1 2 3 21 21 H 1.08999 * 109.46756 * 53.18693 * 1 2 3 22 22 H 0.97006 * 120.00228 * 179.97438 * 7 6 4 23 23 H 1.00903 * 111.00622 * 50.00832 * 12 2 1 24 24 H 1.09004 * 109.46593 * 286.06824 * 14 13 12 25 25 H 1.08999 * 109.47018 * 46.06598 * 14 13 12 26 26 H 1.08999 * 109.47518 * 166.07257 * 14 13 12 27 27 H 1.08994 * 117.50411 * 145.02283 * 15 13 12 28 28 H 1.09005 * 117.49938 * 359.97438 * 15 13 12 29 29 H 1.08998 * 109.47682 * 180.02562 * 17 16 13 30 30 H 1.08998 * 109.47201 * 300.01528 * 17 16 13 31 31 H 1.09004 * 109.47236 * 60.01000 * 17 16 13 32 32 H 1.09006 * 109.47786 * 299.97754 * 18 16 13 33 33 H 1.08998 * 109.47728 * 59.98312 * 18 16 13 34 34 H 1.09008 * 109.47104 * 179.97438 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1616 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6293 -1.7583 -3.7122 12 7 2.0196 -0.6925 1.1994 13 6 1.8376 0.1375 2.3977 14 6 2.0533 1.6392 2.1997 15 6 2.2494 -0.4640 3.7429 16 6 0.7674 -0.2961 3.4015 17 6 -0.0309 -1.5613 3.0807 18 6 -0.0052 0.8048 4.1308 19 1 -0.3634 -1.0204 -0.1218 20 1 -0.3633 0.4047 0.9446 21 1 -0.3633 0.6158 -0.8228 22 1 0.7087 1.1613 -3.4843 23 1 1.5694 -1.5889 1.3086 24 1 3.1194 1.8428 2.0982 25 1 1.5337 1.9652 1.2987 26 1 1.6607 2.1794 3.0611 27 1 2.6739 0.2101 4.4868 28 1 2.6550 -1.4757 3.7389 29 1 -0.7521 -1.7475 3.8765 30 1 -0.5586 -1.4282 2.1363 31 1 0.6491 -2.4094 3.0006 32 1 0.6906 1.4208 4.7005 33 1 -0.5277 1.4254 3.4028 34 1 -0.7292 0.3526 4.8087 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642862584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = -3.382252 kcal Electronic energy + Delta-G solvation = -13296.870265 eV Core-core repulsion = 11229.374204 eV Total energy + Delta-G solvation = -2067.496061 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41008 -36.47256 -33.77738 -31.17273 -29.73297 -28.15367 -27.71120 -27.05367 -22.57180 -21.13532 -19.05042 -18.34803 -16.77201 -16.56904 -15.80257 -15.13675 -14.61124 -14.40473 -13.91675 -13.68510 -13.42398 -13.32911 -13.08420 -12.97436 -12.83424 -12.71367 -12.52521 -12.34569 -12.13212 -11.89795 -11.82618 -10.99158 -10.77564 -10.48930 -10.39846 -8.63812 -8.09697 -6.19690 1.41770 1.42570 1.53562 2.43654 2.90746 3.19644 3.58501 3.83802 3.98270 4.13170 4.28469 4.63086 4.73457 4.78119 4.90171 4.92330 4.93355 5.00457 5.01581 5.05883 5.09331 5.14947 5.20170 5.34720 5.37207 5.51971 5.57161 5.73933 5.83815 6.28464 6.69430 6.87252 6.98934 7.49803 8.96477 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.055991 B = 0.009471 C = 0.009385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.961861 B = 2955.667700 C = 2982.704193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.215 3.785 3 H 0.022 0.978 4 C -0.523 4.523 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.656 5.656 13 C 0.046 3.954 14 C -0.113 4.113 15 C -0.156 4.156 16 C -0.164 4.164 17 C -0.117 4.117 18 C -0.106 4.106 19 H 0.021 0.979 20 H 0.030 0.970 21 H 0.052 0.948 22 H 0.261 0.739 23 H 0.331 0.669 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -0.998 11.429 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.106 3.894 3 H 0.040 0.960 4 C -0.562 4.562 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.284 5.284 13 C -0.047 4.047 14 C -0.171 4.171 15 C -0.194 4.194 16 C -0.167 4.167 17 C -0.174 4.174 18 C -0.163 4.163 19 H 0.040 0.960 20 H 0.049 0.951 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.150 0.850 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.838 -0.698 11.161 11.214 hybrid contribution -0.683 -0.459 -1.049 1.334 sum -1.521 -1.157 10.112 10.291 Atomic orbital electron populations 1.22208 1.00206 0.98980 0.99034 1.19019 0.89800 0.93955 0.86594 0.96011 1.21471 1.30693 1.12522 0.91487 0.93114 1.25669 0.95448 0.95862 1.01734 1.70025 1.37902 1.24114 1.23911 0.85553 0.78732 0.78266 0.79019 1.20186 1.20853 1.19638 1.60489 1.61199 1.05309 1.01400 1.21841 1.02057 0.93604 0.87215 1.21401 1.01456 0.92318 1.01895 1.23436 0.96156 1.02199 0.97581 1.22331 0.90842 0.98937 1.04587 1.21334 0.99582 0.95102 1.01377 1.21296 0.99563 0.96457 0.99004 0.96024 0.95090 0.92887 0.93041 0.85019 0.92718 0.93626 0.89973 0.87359 0.89277 0.90507 0.93767 0.92647 0.91415 0.93475 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.09 7.94 71.98 0.57 -6.52 16 2 C 0.21 11.00 2.11 44.17 0.09 11.09 16 3 H 0.02 1.24 5.59 -2.39 -0.01 1.23 16 4 C -0.52 -29.67 8.84 25.60 0.23 -29.44 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.54 11.40 21.45 0.24 -53.29 16 8 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 N -0.66 -28.69 6.43 -452.10 -2.91 -31.60 16 13 C 0.05 1.63 2.12 3.53 0.01 1.64 16 14 C -0.11 -3.99 8.89 71.98 0.64 -3.35 16 15 C -0.16 -4.49 9.47 30.60 0.29 -4.20 16 16 C -0.16 -4.81 2.35 -52.18 -0.12 -4.93 16 17 C -0.12 -3.34 8.52 71.98 0.61 -2.72 16 18 C -0.11 -2.59 8.44 71.98 0.61 -1.98 16 19 H 0.02 1.02 7.97 -2.39 -0.02 1.00 16 20 H 0.03 1.35 6.70 -2.39 -0.02 1.33 16 21 H 0.05 2.88 6.28 -2.39 -0.02 2.87 16 22 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 23 H 0.33 13.99 6.68 -89.69 -0.60 13.40 16 24 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.04 1.87 5.84 -2.39 -0.01 1.85 16 26 H 0.08 2.33 6.25 -2.39 -0.01 2.31 16 27 H 0.11 2.66 8.05 -2.39 -0.02 2.64 16 28 H 0.09 2.57 8.05 -2.38 -0.02 2.55 16 29 H 0.08 1.81 7.92 -2.39 -0.02 1.79 16 30 H 0.04 1.44 6.45 -2.39 -0.02 1.43 16 31 H 0.05 1.55 7.43 -2.38 -0.02 1.54 16 32 H 0.07 1.45 7.26 -2.38 -0.02 1.43 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.45 7.92 -2.38 -0.02 1.43 16 Total: -1.00 -60.03 263.45 3.21 -56.82 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.47 Total: 20.74 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 3.38 Total: -39.34 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.66 Total: -84.89 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -60.03 3.21 -56.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642862584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.436 kcal (2) G-P(sol) polarization free energy of solvation -60.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds