Wall clock time and date at job start Mon Mar 30 2020 01:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47507 * 2 1 4 4 C 1.50705 * 109.46592 * 239.99965 * 2 1 3 5 5 H 1.08002 * 119.99987 * 239.99841 * 4 2 1 6 6 C 1.37878 * 120.00103 * 60.00369 * 4 2 1 7 7 N 1.31518 * 119.99939 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00095 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47197 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47280 * 119.99532 * 8 6 4 11 11 H 1.48499 * 109.47297 * 240.00217 * 8 6 4 12 12 N 1.46901 * 109.47004 * 120.00626 * 2 1 3 13 13 C 1.46905 * 110.99225 * 246.26383 * 12 2 1 14 14 C 1.53001 * 115.56434 * 274.82320 * 13 12 2 15 15 C 1.52996 * 117.49848 * 60.51899 * 13 12 2 16 16 C 1.53002 * 60.00501 * 107.48502 * 15 13 12 17 17 C 1.53001 * 117.49877 * 107.48388 * 16 15 13 18 18 C 1.53001 * 117.50131 * 252.48910 * 16 15 13 19 19 H 1.08997 * 109.47354 * 173.84443 * 1 2 3 20 20 H 1.08997 * 109.46662 * 293.84058 * 1 2 3 21 21 H 1.09001 * 109.47102 * 53.83712 * 1 2 3 22 22 H 0.96988 * 119.99787 * 180.02562 * 7 6 4 23 23 H 1.00901 * 111.00262 * 10.21318 * 12 2 1 24 24 H 1.08994 * 109.47191 * 199.92655 * 14 13 12 25 25 H 1.08996 * 109.46849 * 319.92902 * 14 13 12 26 26 H 1.08996 * 109.46472 * 79.92754 * 14 13 12 27 27 H 1.09001 * 117.50297 * 359.97438 * 15 13 12 28 28 H 1.08999 * 117.50154 * 214.97233 * 15 13 12 29 29 H 1.09006 * 109.46765 * 111.40068 * 17 16 15 30 30 H 1.08998 * 109.46931 * 231.39622 * 17 16 15 31 31 H 1.08996 * 109.47032 * 351.39803 * 17 16 15 32 32 H 1.09004 * 109.46819 * 8.60100 * 18 16 15 33 33 H 1.09003 * 109.47338 * 128.59921 * 18 16 15 34 34 H 1.08996 * 109.47211 * 248.60649 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 3.1471 -2.2865 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1859 -4.8161 12 7 2.0197 -0.6926 1.1994 13 6 2.7156 0.2385 2.0976 14 6 4.1950 0.4743 1.7867 15 6 1.9136 1.4175 2.6521 16 6 2.2918 0.2516 3.5678 17 6 3.3800 0.4994 4.6144 18 6 1.1756 -0.7058 3.9902 19 1 -0.3634 -1.0217 -0.1102 20 1 -0.3632 0.4154 0.9400 21 1 -0.3633 0.6064 -0.8297 22 1 0.7081 1.1609 -3.4843 23 1 1.2662 -1.1623 1.6787 24 1 4.6934 0.8709 2.6712 25 1 4.6606 -0.4684 1.4994 26 1 4.2849 1.1883 0.9681 27 1 0.8697 1.5026 2.3502 28 1 2.4399 2.3612 2.7955 29 1 2.9370 0.4812 5.6103 30 1 4.1394 -0.2789 4.5403 31 1 3.8385 1.4725 4.4383 32 1 0.2699 -0.4786 3.4279 33 1 1.4812 -1.7323 3.7875 34 1 0.9804 -0.5885 5.0561 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642862585.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:19 Heat of formation + Delta-G solvation = -6.138373 kcal Electronic energy + Delta-G solvation = -13170.987421 eV Core-core repulsion = 11103.371846 eV Total energy + Delta-G solvation = -2067.615575 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40195 -36.44093 -33.74530 -31.22024 -29.52065 -28.47760 -27.48795 -27.17200 -22.68162 -21.09500 -19.22891 -18.15239 -16.72799 -16.61270 -15.82276 -15.04198 -14.70398 -14.45941 -14.19289 -13.74005 -13.38738 -13.26947 -13.07876 -12.87556 -12.76253 -12.74791 -12.57047 -12.30479 -12.10776 -11.94689 -11.79758 -11.37766 -10.73985 -10.46952 -10.12932 -8.91021 -8.07123 -6.17392 1.40668 1.42175 1.54959 2.44432 2.77734 3.19961 3.58949 3.81513 3.93802 3.98643 4.23090 4.69874 4.70735 4.79525 4.83193 4.89142 4.92286 4.97181 5.02068 5.04663 5.07799 5.08382 5.17645 5.31343 5.42812 5.48341 5.54378 5.69896 5.83950 6.32341 6.70082 6.92956 6.96103 7.51976 8.98036 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054111 B = 0.009509 C = 0.008959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.332547 B = 2943.928735 C = 3124.592533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.224 3.776 3 H -0.006 1.006 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.005 3.995 7 N -0.925 5.925 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.658 5.658 13 C 0.046 3.954 14 C -0.096 4.096 15 C -0.214 4.214 16 C -0.114 4.114 17 C -0.107 4.107 18 C -0.117 4.117 19 H 0.031 0.969 20 H 0.025 0.975 21 H 0.059 0.941 22 H 0.259 0.741 23 H 0.330 0.670 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 -0.640 12.219 12.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.116 3.884 3 H 0.012 0.988 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.192 4.192 7 N -0.566 5.566 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.287 5.287 13 C -0.047 4.047 14 C -0.154 4.154 15 C -0.254 4.254 16 C -0.115 4.115 17 C -0.164 4.164 18 C -0.174 4.174 19 H 0.050 0.950 20 H 0.044 0.956 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.149 0.851 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.185 -0.776 11.760 12.208 hybrid contribution -0.825 0.389 -0.972 1.333 sum 2.360 -0.387 10.788 11.050 Atomic orbital electron populations 1.22131 0.99300 0.99752 0.99168 1.18889 0.90239 0.91831 0.87458 0.98836 1.21565 1.29987 1.11973 0.91097 0.93080 1.25732 0.95691 0.95953 1.01844 1.70031 1.38377 1.24392 1.23754 0.85495 0.78078 0.78602 0.79366 1.19420 1.20584 1.20765 1.60428 1.32349 1.29166 1.06806 1.22025 0.95046 0.95301 0.92332 1.21140 0.92171 1.01085 1.00987 1.23771 1.00485 0.94618 1.06487 1.22084 0.99631 0.98702 0.91067 1.21347 0.96422 1.01826 0.96840 1.21356 0.95622 0.98370 1.02096 0.94960 0.95564 0.92222 0.93154 0.85069 0.89722 0.92606 0.94728 0.90986 0.88606 0.90492 0.91516 0.92024 0.93845 0.91754 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.18 8.70 71.98 0.63 -6.55 16 2 C 0.22 11.68 2.46 44.17 0.11 11.79 16 3 H -0.01 -0.36 7.27 -2.39 -0.02 -0.38 16 4 C -0.51 -29.20 8.84 25.60 0.23 -28.97 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.30 5.30 84.65 0.45 0.75 16 7 N -0.92 -54.66 11.39 21.45 0.24 -54.42 16 8 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 N -0.66 -28.96 6.56 -452.06 -2.97 -31.92 16 13 C 0.05 1.69 2.18 3.53 0.01 1.70 16 14 C -0.10 -3.37 9.84 71.98 0.71 -2.67 16 15 C -0.21 -7.33 8.71 30.59 0.27 -7.06 16 16 C -0.11 -3.27 2.70 -52.18 -0.14 -3.41 16 17 C -0.11 -2.32 8.38 71.98 0.60 -1.72 16 18 C -0.12 -3.02 8.47 71.98 0.61 -2.41 16 19 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 20 H 0.03 1.13 7.26 -2.39 -0.02 1.12 16 21 H 0.06 3.28 6.26 -2.39 -0.01 3.26 16 22 H 0.26 14.55 8.31 -92.72 -0.77 13.78 16 23 H 0.33 13.50 6.00 -89.69 -0.54 12.96 16 24 H 0.08 2.32 6.08 -2.39 -0.01 2.31 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 27 H 0.07 2.70 7.16 -2.39 -0.02 2.68 16 28 H 0.10 3.02 8.05 -2.39 -0.02 3.00 16 29 H 0.08 1.35 7.92 -2.38 -0.02 1.33 16 30 H 0.07 1.38 8.09 -2.39 -0.02 1.37 16 31 H 0.06 1.27 7.32 -2.39 -0.02 1.25 16 32 H 0.04 1.22 7.56 -2.38 -0.02 1.20 16 33 H 0.06 1.66 7.98 -2.39 -0.02 1.64 16 34 H 0.08 1.70 7.92 -2.39 -0.02 1.68 16 Total: -1.00 -62.13 269.81 3.29 -58.84 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.52 Total: 18.77 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 3.46 Total: -38.55 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -2.72 Total: -86.34 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -62.13 3.29 -58.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642862585.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.700 kcal (2) G-P(sol) polarization free energy of solvation -62.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds