Wall clock time and date at job start Mon Mar 30 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47204 * 2 1 4 4 C 1.50692 * 109.47306 * 120.00313 * 2 1 3 5 5 H 1.08003 * 120.00399 * 120.00138 * 4 2 1 6 6 C 1.37877 * 120.00018 * 300.00000 * 4 2 1 7 7 N 1.31520 * 119.99679 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99873 * 359.72589 * 6 4 2 9 9 H 1.48496 * 109.47232 * 90.00041 * 8 6 4 10 10 H 1.48503 * 109.46886 * 209.99945 * 8 6 4 11 11 H 1.48495 * 109.47218 * 329.99595 * 8 6 4 12 12 N 1.46911 * 109.46995 * 240.00632 * 2 1 3 13 13 C 1.46897 * 111.00013 * 79.96741 * 12 2 1 14 14 C 1.53001 * 115.55251 * 39.90213 * 13 12 2 15 15 C 1.53001 * 117.49951 * 254.18761 * 13 12 2 16 16 C 1.52996 * 60.00047 * 252.51243 * 15 13 12 17 17 C 1.53001 * 117.50154 * 252.50664 * 16 15 13 18 18 C 1.53002 * 117.49788 * 107.48879 * 16 15 13 19 19 H 1.08997 * 109.46671 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47177 * 299.99826 * 1 2 3 21 21 H 1.09004 * 109.47197 * 59.99615 * 1 2 3 22 22 H 0.97002 * 119.99675 * 179.97438 * 7 6 4 23 23 H 1.00897 * 110.99350 * 203.92188 * 12 2 1 24 24 H 1.08997 * 109.47096 * 53.91891 * 14 13 12 25 25 H 1.08995 * 109.47183 * 173.92821 * 14 13 12 26 26 H 1.09010 * 109.46518 * 293.92472 * 14 13 12 27 27 H 1.08998 * 117.49372 * 0.02562 * 15 13 12 28 28 H 1.09000 * 117.49785 * 145.02193 * 15 13 12 29 29 H 1.09002 * 109.46899 * 128.62257 * 17 16 15 30 30 H 1.08995 * 109.47250 * 248.62284 * 17 16 15 31 31 H 1.08997 * 109.46585 * 8.62785 * 17 16 15 32 32 H 1.09006 * 109.47123 * 351.37524 * 18 16 15 33 33 H 1.08998 * 109.47193 * 111.37651 * 18 16 15 34 34 H 1.08998 * 109.47421 * 231.37698 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4826 7 7 2.1374 -0.8598 3.5564 8 14 0.6317 1.2837 2.6541 9 1 -0.7978 0.8840 2.6968 10 1 0.9840 1.9965 3.9084 11 1 0.8603 2.1816 1.4937 12 7 2.0197 -0.6924 -1.1996 13 6 1.9699 0.1892 -2.3735 14 6 2.3778 1.6428 -2.1250 15 6 0.8705 -0.0699 -3.4056 16 6 2.3235 -0.4214 -3.7311 17 6 3.0575 0.4684 -4.7364 18 6 2.7019 -1.9035 -3.7620 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.9034 -0.5283 4.4375 23 1 2.9520 -1.0501 -1.0553 24 1 3.3631 1.6692 -1.6598 25 1 2.4092 2.1786 -3.0736 26 1 1.6513 2.1160 -1.4643 27 1 0.1840 -0.8943 -3.2132 28 1 0.4374 0.7953 -3.9075 29 1 4.0070 0.7918 -4.3099 30 1 3.2429 -0.0938 -5.6515 31 1 2.4453 1.3411 -4.9637 32 1 1.8697 -2.4989 -3.3863 33 1 2.9273 -2.1997 -4.7865 34 1 3.5783 -2.0680 -3.1352 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642862586.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:23 Heat of formation + Delta-G solvation = 18.976223 kcal Electronic energy + Delta-G solvation = -13202.100407 eV Core-core repulsion = 11135.573882 eV Total energy + Delta-G solvation = -2066.526525 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.91076 -34.92974 -32.02967 -29.78675 -28.45511 -27.52788 -26.36536 -24.92643 -20.92741 -19.39192 -17.77459 -16.62835 -15.28565 -14.92273 -14.25020 -13.75317 -13.49333 -12.89365 -12.73940 -12.55645 -12.17779 -12.08446 -11.84231 -11.67301 -11.40105 -11.27809 -10.94419 -10.73816 -10.50226 -10.13776 -9.66471 -9.44157 -8.91342 -8.85471 -8.58596 -7.44356 -6.07844 -4.06673 3.28092 3.37082 3.39682 4.07477 4.40180 4.77873 5.05618 5.15825 5.25545 5.35662 5.52806 5.77826 5.83002 6.00575 6.05293 6.10594 6.15120 6.21941 6.25012 6.33905 6.44818 6.46501 6.59965 6.63235 6.72051 6.79731 6.92185 7.44852 7.63296 8.01343 8.38336 8.66350 8.97469 9.54940 11.05325 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.053113 B = 0.010222 C = 0.009598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.050836 B = 2738.634080 C = 2916.600070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.180 3.820 3 H 0.009 0.991 4 C -0.517 4.517 5 H 0.077 0.923 6 C 0.071 3.929 7 N -0.900 5.900 8 Si 0.891 3.109 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.640 5.640 13 C 0.054 3.946 14 C -0.140 4.140 15 C -0.159 4.159 16 C -0.129 4.129 17 C -0.111 4.111 18 C -0.103 4.103 19 H 0.055 0.945 20 H 0.035 0.965 21 H 0.027 0.973 22 H 0.264 0.736 23 H 0.340 0.660 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 3.478 -13.594 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.072 3.928 3 H 0.027 0.973 4 C -0.555 4.555 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.194 1.194 12 N -0.271 5.271 13 C -0.039 4.039 14 C -0.199 4.199 15 C -0.197 4.197 16 C -0.130 4.130 17 C -0.168 4.168 18 C -0.160 4.160 19 H 0.074 0.926 20 H 0.053 0.947 21 H 0.046 0.954 22 H 0.074 0.926 23 H 0.160 0.840 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.838 3.161 -13.502 13.892 hybrid contribution 0.003 1.385 0.537 1.486 sum -0.836 4.546 -12.965 13.764 Atomic orbital electron populations 1.22034 0.98824 1.00827 0.97680 1.19592 0.91682 0.93545 0.88027 0.97339 1.21093 1.32102 1.13679 0.88614 0.90454 1.24918 0.95737 0.96710 0.95759 1.69897 1.45696 1.40343 0.97892 0.86806 0.80667 0.83697 0.76684 1.20580 1.22607 1.19392 1.60383 1.29069 1.34968 1.02683 1.21626 1.02290 0.91775 0.88234 1.21748 1.01534 0.95453 1.01137 1.23310 0.91193 1.02578 1.02614 1.21707 0.98001 0.96275 0.96996 1.21339 0.99707 0.98384 0.97408 1.21150 1.01881 0.92716 1.00258 0.92614 0.94691 0.95390 0.92643 0.84016 0.92410 0.92723 0.91936 0.88635 0.89912 0.92553 0.92633 0.92813 0.91805 0.93391 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.85 37.16 0.33 -2.79 16 2 C 0.18 4.31 1.93 -68.86 -0.13 4.17 16 3 H 0.01 0.22 4.71 -51.92 -0.24 -0.02 16 4 C -0.52 -14.59 9.18 -34.44 -0.32 -14.90 16 5 H 0.08 2.36 7.94 -52.48 -0.42 1.94 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 8 Si 0.89 22.37 24.38 -169.99 -4.14 18.23 16 9 H -0.28 -6.87 6.86 56.52 0.39 -6.48 16 10 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 12 N -0.64 -13.24 5.87 -94.24 -0.55 -13.79 16 13 C 0.05 0.92 2.28 -131.60 -0.30 0.62 16 14 C -0.14 -2.31 8.14 37.16 0.30 -2.01 16 15 C -0.16 -2.46 9.30 -26.73 -0.25 -2.71 16 16 C -0.13 -1.87 2.70 -154.51 -0.42 -2.28 16 17 C -0.11 -1.33 8.56 37.16 0.32 -1.01 16 18 C -0.10 -1.43 9.26 37.16 0.34 -1.08 16 19 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 20 H 0.03 0.82 3.29 -51.93 -0.17 0.65 16 21 H 0.03 0.57 7.72 -51.93 -0.40 0.17 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.34 7.10 8.37 -39.29 -0.33 6.77 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.76 6.50 -51.93 -0.34 0.42 16 26 H 0.06 1.12 6.94 -51.92 -0.36 0.76 16 27 H 0.10 1.56 8.05 -51.93 -0.42 1.14 16 28 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.59 7.92 -51.93 -0.41 0.17 16 31 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 32 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 33 H 0.05 0.57 7.92 -51.93 -0.41 0.15 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 263.77 15.07 3.97 3.97 Total: -1.00 -29.48 263.77 -5.74 -35.23 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.58 Total: 3.32 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -0.22 Total: -20.04 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.22 Total: -40.71 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.48 -5.74 -35.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642862586.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.204 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds