Wall clock time and date at job start Mon Mar 30 2020 01:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47204 * 2 1 4 4 C 1.50692 * 109.47306 * 120.00313 * 2 1 3 5 5 H 1.08003 * 120.00399 * 120.00138 * 4 2 1 6 6 C 1.37877 * 120.00018 * 300.00000 * 4 2 1 7 7 N 1.31520 * 119.99679 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99873 * 359.72589 * 6 4 2 9 9 H 1.48496 * 109.47232 * 90.00041 * 8 6 4 10 10 H 1.48503 * 109.46886 * 209.99945 * 8 6 4 11 11 H 1.48495 * 109.47218 * 329.99595 * 8 6 4 12 12 N 1.46911 * 109.46995 * 240.00632 * 2 1 3 13 13 C 1.46897 * 111.00013 * 79.96741 * 12 2 1 14 14 C 1.53001 * 115.55251 * 39.90213 * 13 12 2 15 15 C 1.53001 * 117.49951 * 254.18761 * 13 12 2 16 16 C 1.52996 * 60.00047 * 252.51243 * 15 13 12 17 17 C 1.53001 * 117.50154 * 252.50664 * 16 15 13 18 18 C 1.53002 * 117.49788 * 107.48879 * 16 15 13 19 19 H 1.08997 * 109.46671 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47177 * 299.99826 * 1 2 3 21 21 H 1.09004 * 109.47197 * 59.99615 * 1 2 3 22 22 H 0.97002 * 119.99675 * 179.97438 * 7 6 4 23 23 H 1.00897 * 110.99350 * 203.92188 * 12 2 1 24 24 H 1.08997 * 109.47096 * 53.91891 * 14 13 12 25 25 H 1.08995 * 109.47183 * 173.92821 * 14 13 12 26 26 H 1.09010 * 109.46518 * 293.92472 * 14 13 12 27 27 H 1.08998 * 117.49372 * 0.02562 * 15 13 12 28 28 H 1.09000 * 117.49785 * 145.02193 * 15 13 12 29 29 H 1.09002 * 109.46899 * 128.62257 * 17 16 15 30 30 H 1.08995 * 109.47250 * 248.62284 * 17 16 15 31 31 H 1.08997 * 109.46585 * 8.62785 * 17 16 15 32 32 H 1.09006 * 109.47123 * 351.37524 * 18 16 15 33 33 H 1.08998 * 109.47193 * 111.37651 * 18 16 15 34 34 H 1.08998 * 109.47421 * 231.37698 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4826 7 7 2.1374 -0.8598 3.5564 8 14 0.6317 1.2837 2.6541 9 1 -0.7978 0.8840 2.6968 10 1 0.9840 1.9965 3.9084 11 1 0.8603 2.1816 1.4937 12 7 2.0197 -0.6924 -1.1996 13 6 1.9699 0.1892 -2.3735 14 6 2.3778 1.6428 -2.1250 15 6 0.8705 -0.0699 -3.4056 16 6 2.3235 -0.4214 -3.7311 17 6 3.0575 0.4684 -4.7364 18 6 2.7019 -1.9035 -3.7620 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.9034 -0.5283 4.4375 23 1 2.9520 -1.0501 -1.0553 24 1 3.3631 1.6692 -1.6598 25 1 2.4092 2.1786 -3.0736 26 1 1.6513 2.1160 -1.4643 27 1 0.1840 -0.8943 -3.2132 28 1 0.4374 0.7953 -3.9075 29 1 4.0070 0.7918 -4.3099 30 1 3.2429 -0.0938 -5.6515 31 1 2.4453 1.3411 -4.9637 32 1 1.8697 -2.4989 -3.3863 33 1 2.9273 -2.1997 -4.7865 34 1 3.5783 -2.0680 -3.1352 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642862586.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:22 Heat of formation + Delta-G solvation = -0.902869 kcal Electronic energy + Delta-G solvation = -13202.962429 eV Core-core repulsion = 11135.573882 eV Total energy + Delta-G solvation = -2067.388547 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22423 -36.70292 -34.08288 -31.25951 -29.92209 -28.71353 -27.54597 -27.03498 -22.59965 -20.86163 -19.35623 -18.46689 -17.15681 -16.38346 -15.58914 -15.48047 -14.90871 -14.63336 -14.11514 -14.01906 -13.88165 -13.33003 -13.18422 -12.95660 -12.85526 -12.71997 -12.60652 -12.31774 -12.12523 -11.84685 -11.47855 -11.18984 -10.79638 -10.61125 -10.12985 -9.07191 -8.32359 -6.35787 1.28768 1.32696 1.43668 2.29312 2.84716 3.03223 3.34407 3.86317 3.98474 4.21709 4.30635 4.47903 4.61321 4.74881 4.78532 4.82709 4.85874 4.92905 4.97403 5.05007 5.06561 5.10515 5.18839 5.21969 5.30904 5.37160 5.53702 5.62332 5.66496 6.04467 6.52059 6.69672 6.85688 7.30501 8.84396 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.053113 B = 0.010222 C = 0.009598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.050836 B = 2738.634080 C = 2916.600070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.187 3.813 3 H 0.007 0.993 4 C -0.522 4.522 5 H 0.037 0.963 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.952 3.048 9 H -0.268 1.268 10 H -0.297 1.297 11 H -0.250 1.250 12 N -0.645 5.645 13 C 0.021 3.979 14 C -0.134 4.134 15 C -0.154 4.154 16 C -0.112 4.112 17 C -0.109 4.109 18 C -0.104 4.104 19 H 0.045 0.955 20 H 0.029 0.971 21 H 0.054 0.946 22 H 0.266 0.734 23 H 0.333 0.667 24 H 0.046 0.954 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 5.094 -15.905 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.078 3.922 3 H 0.025 0.975 4 C -0.560 4.560 5 H 0.055 0.945 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.224 1.224 11 H -0.175 1.175 12 N -0.275 5.275 13 C -0.071 4.071 14 C -0.193 4.193 15 C -0.192 4.192 16 C -0.112 4.112 17 C -0.166 4.166 18 C -0.161 4.161 19 H 0.064 0.936 20 H 0.048 0.952 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.151 0.849 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.631 4.776 -15.846 16.630 hybrid contribution 0.322 0.776 1.195 1.461 sum -1.309 5.552 -14.651 15.722 Atomic orbital electron populations 1.21930 0.97682 1.00554 0.98637 1.19390 0.92442 0.92855 0.87548 0.97541 1.21400 1.31212 1.12551 0.90824 0.94457 1.25779 0.97254 1.00030 0.95329 1.70043 1.47651 1.42498 0.98579 0.85798 0.79111 0.79957 0.77191 1.19397 1.22444 1.17461 1.60301 1.28613 1.35820 1.02732 1.21798 1.05367 0.91962 0.87946 1.21687 1.00305 0.95040 1.02267 1.23367 0.91377 1.02985 1.01424 1.21867 0.97502 0.96700 0.95177 1.21373 0.99516 0.98514 0.97238 1.21171 1.00886 0.92461 1.01618 0.93560 0.95225 0.92745 0.92483 0.84878 0.93510 0.89681 0.93557 0.89758 0.87747 0.92430 0.90724 0.91604 0.93374 0.90795 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.85 71.98 0.64 -5.14 16 2 C 0.19 8.88 1.93 44.16 0.09 8.97 16 3 H 0.01 0.34 4.71 -2.38 -0.01 0.33 16 4 C -0.52 -30.22 9.18 25.60 0.23 -29.99 16 5 H 0.04 2.39 7.94 -2.91 -0.02 2.37 16 6 C 0.01 0.80 5.45 84.65 0.46 1.26 16 7 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 8 Si 0.95 45.85 24.38 68.60 1.67 47.52 16 9 H -0.27 -12.37 6.86 99.48 0.68 -11.68 16 10 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 11 H -0.25 -11.24 6.53 99.48 0.65 -10.59 16 12 N -0.64 -26.58 5.87 -452.08 -2.66 -29.23 16 13 C 0.02 0.70 2.28 3.53 0.01 0.71 16 14 C -0.13 -4.13 8.14 71.98 0.59 -3.55 16 15 C -0.15 -4.31 9.30 30.59 0.28 -4.03 16 16 C -0.11 -2.92 2.70 -52.18 -0.14 -3.06 16 17 C -0.11 -2.17 8.56 71.98 0.62 -1.56 16 18 C -0.10 -2.70 9.26 71.98 0.67 -2.03 16 19 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 20 H 0.03 1.33 3.29 -2.39 -0.01 1.32 16 21 H 0.05 2.09 7.72 -2.38 -0.02 2.08 16 22 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 23 H 0.33 14.23 8.37 -89.70 -0.75 13.48 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 2.05 6.50 -2.39 -0.02 2.04 16 26 H 0.05 1.55 6.94 -2.38 -0.02 1.54 16 27 H 0.08 2.57 8.05 -2.39 -0.02 2.55 16 28 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.23 7.92 -2.39 -0.02 1.21 16 31 H 0.06 1.17 7.22 -2.39 -0.02 1.15 16 32 H 0.05 1.39 7.90 -2.38 -0.02 1.37 16 33 H 0.07 1.53 7.92 -2.39 -0.02 1.51 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.03 263.77 2.99 -61.04 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.24 Total: 18.69 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.44 Total: -38.42 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -2.36 Total: -88.83 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.52 kcal Total: -64.03 2.99 -61.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642862586.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.138 kcal (2) G-P(sol) polarization free energy of solvation -64.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds