Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46946 * 2 1 4 4 C 1.50697 * 109.46832 * 119.99653 * 2 1 3 5 5 H 1.07997 * 119.99841 * 119.99681 * 4 2 1 6 6 C 1.37876 * 120.00169 * 299.99884 * 4 2 1 7 7 N 1.31514 * 120.00107 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99769 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47240 * 60.00274 * 8 6 4 10 10 H 1.48507 * 109.46869 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47203 * 299.99834 * 8 6 4 12 12 N 1.46898 * 109.46998 * 239.99699 * 2 1 3 13 13 C 1.46896 * 110.99806 * 97.61428 * 12 2 1 14 14 C 1.52999 * 115.56227 * 319.95844 * 13 12 2 15 15 C 1.52998 * 117.50309 * 105.65278 * 13 12 2 16 16 C 1.53003 * 60.00104 * 107.48478 * 15 13 12 17 17 C 1.52993 * 117.50204 * 252.50702 * 16 15 13 18 18 C 1.53007 * 117.49508 * 107.49203 * 16 15 13 19 19 H 1.09001 * 109.46796 * 56.60783 * 1 2 3 20 20 H 1.08990 * 109.47379 * 176.61198 * 1 2 3 21 21 H 1.09004 * 109.46846 * 296.61793 * 1 2 3 22 22 H 0.96997 * 119.99944 * 179.97438 * 7 6 4 23 23 H 1.00900 * 110.99584 * 221.56564 * 12 2 1 24 24 H 1.09000 * 109.47247 * 280.22909 * 14 13 12 25 25 H 1.09004 * 109.47287 * 40.22957 * 14 13 12 26 26 H 1.09003 * 109.47089 * 160.22844 * 14 13 12 27 27 H 1.09000 * 117.49731 * 359.97438 * 15 13 12 28 28 H 1.08997 * 117.49910 * 214.97797 * 15 13 12 29 29 H 1.09007 * 109.46886 * 128.62135 * 17 16 15 30 30 H 1.08993 * 109.47668 * 248.62110 * 17 16 15 31 31 H 1.08996 * 109.47211 * 8.62950 * 17 16 15 32 32 H 1.09002 * 109.47235 * 351.37507 * 18 16 15 33 33 H 1.08996 * 109.46886 * 111.37607 * 18 16 15 34 34 H 1.08999 * 109.46909 * 231.37877 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.8074 -1.1188 4.0078 10 1 1.8279 -0.4190 5.2205 11 1 1.8280 -2.5196 4.0083 12 7 2.0197 -0.6926 -1.1994 13 6 2.3664 0.2667 -2.2564 14 6 1.4110 1.4515 -2.4121 15 6 3.8519 0.5174 -2.5235 16 6 3.0195 -0.2856 -3.5251 17 6 3.2614 -1.7946 -3.5957 18 6 2.6671 0.3893 -4.8523 19 1 -0.3633 0.5656 -0.8580 20 1 -0.3633 -1.0258 -0.0607 21 1 -0.3633 0.4605 0.9188 22 1 0.7081 1.1610 3.4843 23 1 2.8047 -1.2868 -0.9786 24 1 0.5316 1.1377 -2.9745 25 1 1.1055 1.8039 -1.4269 26 1 1.9152 2.2572 -2.9458 27 1 4.5720 -0.0292 -1.9145 28 1 4.1485 1.5263 -2.8100 29 1 2.3100 -2.3195 -3.5095 30 1 3.7287 -2.0435 -4.5484 31 1 3.9177 -2.0959 -2.7793 32 1 2.9556 1.4397 -4.8137 33 1 3.2012 -0.1046 -5.6640 34 1 1.5935 0.3135 -5.0246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642862587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = 11.213880 kcal Electronic energy + Delta-G solvation = -13134.649825 eV Core-core repulsion = 11067.786700 eV Total energy + Delta-G solvation = -2066.863125 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.82870 -34.73079 -31.92210 -29.38059 -28.40902 -26.65056 -26.45975 -24.95209 -20.80546 -19.39147 -17.63446 -16.49026 -14.96608 -14.75598 -14.22640 -13.59768 -13.27870 -12.85377 -12.65081 -12.10377 -11.86286 -11.75806 -11.55780 -11.29948 -11.16265 -10.87696 -10.85604 -10.64146 -10.46111 -10.13629 -10.07085 -9.58289 -8.90662 -8.77606 -8.40612 -7.05602 -6.01783 -4.09108 3.30671 3.35120 3.37816 4.23291 4.41314 5.02194 5.17134 5.27053 5.31773 5.44081 5.54932 5.92511 5.93208 6.14132 6.18421 6.23031 6.26247 6.30368 6.36301 6.46739 6.60198 6.74646 6.79946 6.95926 7.22757 7.33296 7.54440 7.77537 8.00069 8.26814 8.41466 8.70130 9.03046 9.56625 11.03584 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051982 B = 0.009468 C = 0.008740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.522990 B = 2956.470532 C = 3202.880088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.211 3.789 3 H 0.014 0.986 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.651 5.651 13 C 0.083 3.917 14 C -0.115 4.115 15 C -0.216 4.216 16 C -0.135 4.135 17 C -0.104 4.104 18 C -0.106 4.106 19 H 0.010 0.990 20 H 0.028 0.972 21 H 0.080 0.920 22 H 0.261 0.739 23 H 0.333 0.667 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -0.351 -9.810 10.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.104 3.896 3 H 0.032 0.968 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.723 3.277 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.280 5.280 13 C -0.010 4.010 14 C -0.172 4.172 15 C -0.256 4.256 16 C -0.136 4.136 17 C -0.161 4.161 18 C -0.164 4.164 19 H 0.029 0.971 20 H 0.047 0.953 21 H 0.098 0.902 22 H 0.071 0.929 23 H 0.152 0.848 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.137 -0.363 -9.871 10.106 hybrid contribution 1.270 -0.111 1.246 1.782 sum 3.407 -0.474 -8.626 9.286 Atomic orbital electron populations 1.21816 0.97891 0.98859 0.99996 1.19120 0.92527 0.93126 0.84781 0.96817 1.21361 1.31566 1.12554 0.90904 0.92545 1.24898 0.95001 0.94978 0.98948 1.69878 1.36442 1.22806 1.23548 0.86614 0.79072 0.79817 0.82213 1.20384 1.21247 1.20214 1.60543 1.37185 1.19892 1.10361 1.21709 0.90828 0.94549 0.93943 1.21433 0.98028 0.94749 1.02973 1.23921 0.97151 1.00399 1.04161 1.21772 1.05287 0.94971 0.91609 1.21179 1.01589 0.92973 1.00398 1.21258 1.01095 0.99350 0.94676 0.97052 0.95331 0.90178 0.92860 0.84778 0.92402 0.90362 0.93281 0.89469 0.89842 0.91815 0.93477 0.92900 0.92937 0.92953 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.97 37.16 0.33 -2.85 16 2 C 0.21 5.37 2.07 -68.86 -0.14 5.23 16 3 H 0.01 0.39 6.39 -51.93 -0.33 0.06 16 4 C -0.53 -14.48 8.59 -34.44 -0.30 -14.78 16 5 H 0.06 1.53 7.44 -52.49 -0.39 1.14 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.40 11.30 55.43 0.63 -24.77 16 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 N -0.65 -14.24 6.18 -94.25 -0.58 -14.82 16 13 C 0.08 1.57 2.65 -131.60 -0.35 1.22 16 14 C -0.11 -2.06 7.66 37.16 0.28 -1.77 16 15 C -0.22 -3.69 9.18 -26.73 -0.25 -3.93 16 16 C -0.14 -2.14 2.70 -154.51 -0.42 -2.56 16 17 C -0.10 -1.54 9.08 37.15 0.34 -1.20 16 18 C -0.11 -1.41 8.85 37.16 0.33 -1.08 16 19 H 0.01 0.24 6.41 -51.93 -0.33 -0.09 16 20 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.08 2.18 5.99 -51.93 -0.31 1.87 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.33 7.26 7.06 -39.29 -0.28 6.99 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.08 1.60 5.08 -51.93 -0.26 1.33 16 26 H 0.05 0.76 7.53 -51.93 -0.39 0.37 16 27 H 0.09 1.52 8.03 -51.93 -0.42 1.10 16 28 H 0.08 1.32 7.99 -51.93 -0.42 0.91 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.60 7.92 -51.93 -0.41 0.18 16 31 H 0.05 0.79 7.55 -51.93 -0.39 0.40 16 32 H 0.05 0.66 7.56 -51.93 -0.39 0.27 16 33 H 0.05 0.61 7.92 -51.93 -0.41 0.20 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 267.14 15.07 4.03 4.03 Total: -1.00 -27.95 267.14 -6.78 -34.73 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.56 Total: 4.56 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -0.26 Total: -20.07 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.04 Total: -39.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.95 -6.78 -34.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642862587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.944 kcal (2) G-P(sol) polarization free energy of solvation -27.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds