Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46946 * 2 1 4 4 C 1.50697 * 109.46832 * 119.99653 * 2 1 3 5 5 H 1.07997 * 119.99841 * 119.99681 * 4 2 1 6 6 C 1.37876 * 120.00169 * 299.99884 * 4 2 1 7 7 N 1.31514 * 120.00107 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99769 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47240 * 60.00274 * 8 6 4 10 10 H 1.48507 * 109.46869 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47203 * 299.99834 * 8 6 4 12 12 N 1.46898 * 109.46998 * 239.99699 * 2 1 3 13 13 C 1.46896 * 110.99806 * 97.61428 * 12 2 1 14 14 C 1.52999 * 115.56227 * 319.95844 * 13 12 2 15 15 C 1.52998 * 117.50309 * 105.65278 * 13 12 2 16 16 C 1.53003 * 60.00104 * 107.48478 * 15 13 12 17 17 C 1.52993 * 117.50204 * 252.50702 * 16 15 13 18 18 C 1.53007 * 117.49508 * 107.49203 * 16 15 13 19 19 H 1.09001 * 109.46796 * 56.60783 * 1 2 3 20 20 H 1.08990 * 109.47379 * 176.61198 * 1 2 3 21 21 H 1.09004 * 109.46846 * 296.61793 * 1 2 3 22 22 H 0.96997 * 119.99944 * 179.97438 * 7 6 4 23 23 H 1.00900 * 110.99584 * 221.56564 * 12 2 1 24 24 H 1.09000 * 109.47247 * 280.22909 * 14 13 12 25 25 H 1.09004 * 109.47287 * 40.22957 * 14 13 12 26 26 H 1.09003 * 109.47089 * 160.22844 * 14 13 12 27 27 H 1.09000 * 117.49731 * 359.97438 * 15 13 12 28 28 H 1.08997 * 117.49910 * 214.97797 * 15 13 12 29 29 H 1.09007 * 109.46886 * 128.62135 * 17 16 15 30 30 H 1.08993 * 109.47668 * 248.62110 * 17 16 15 31 31 H 1.08996 * 109.47211 * 8.62950 * 17 16 15 32 32 H 1.09002 * 109.47235 * 351.37507 * 18 16 15 33 33 H 1.08996 * 109.46886 * 111.37607 * 18 16 15 34 34 H 1.08999 * 109.46909 * 231.37877 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.8074 -1.1188 4.0078 10 1 1.8279 -0.4190 5.2205 11 1 1.8280 -2.5196 4.0083 12 7 2.0197 -0.6926 -1.1994 13 6 2.3664 0.2667 -2.2564 14 6 1.4110 1.4515 -2.4121 15 6 3.8519 0.5174 -2.5235 16 6 3.0195 -0.2856 -3.5251 17 6 3.2614 -1.7946 -3.5957 18 6 2.6671 0.3893 -4.8523 19 1 -0.3633 0.5656 -0.8580 20 1 -0.3633 -1.0258 -0.0607 21 1 -0.3633 0.4605 0.9188 22 1 0.7081 1.1610 3.4843 23 1 2.8047 -1.2868 -0.9786 24 1 0.5316 1.1377 -2.9745 25 1 1.1055 1.8039 -1.4269 26 1 1.9152 2.2572 -2.9458 27 1 4.5720 -0.0292 -1.9145 28 1 4.1485 1.5263 -2.8100 29 1 2.3100 -2.3195 -3.5095 30 1 3.7287 -2.0435 -4.5484 31 1 3.9177 -2.0959 -2.7793 32 1 2.9556 1.4397 -4.8137 33 1 3.2012 -0.1046 -5.6640 34 1 1.5935 0.3135 -5.0246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642862587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = -5.629599 kcal Electronic energy + Delta-G solvation = -13135.380213 eV Core-core repulsion = 11067.786700 eV Total energy + Delta-G solvation = -2067.593513 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.25723 -36.59601 -33.84601 -30.84936 -29.97532 -28.14077 -27.79259 -26.98799 -22.55502 -20.99913 -19.22414 -18.32333 -16.83328 -16.41344 -15.85639 -14.98216 -14.76680 -14.40814 -14.20074 -13.62284 -13.33491 -13.09447 -12.98597 -12.92889 -12.83290 -12.63912 -12.48547 -12.36491 -12.13103 -12.03381 -11.83767 -11.11359 -10.88447 -10.48998 -10.26546 -8.74897 -8.12543 -6.28095 1.40482 1.42124 1.49731 2.39938 2.87358 3.14171 3.58213 3.84885 3.96900 4.07557 4.29765 4.66727 4.78901 4.86808 4.89402 4.91541 4.95083 4.98401 5.09741 5.12597 5.14828 5.21611 5.29680 5.32260 5.39686 5.51806 5.59026 5.68676 5.97435 6.22305 6.48057 6.81615 7.03120 7.42092 8.91377 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051982 B = 0.009468 C = 0.008740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.522990 B = 2956.470532 C = 3202.880088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.220 3.780 3 H -0.015 1.015 4 C -0.547 4.547 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.651 5.651 13 C 0.046 3.954 14 C -0.108 4.108 15 C -0.216 4.216 16 C -0.112 4.112 17 C -0.105 4.105 18 C -0.106 4.106 19 H 0.028 0.972 20 H 0.022 0.978 21 H 0.055 0.945 22 H 0.263 0.737 23 H 0.331 0.669 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -0.817 -11.036 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.112 3.888 3 H 0.002 0.998 4 C -0.585 4.585 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.279 5.279 13 C -0.047 4.047 14 C -0.165 4.165 15 C -0.256 4.256 16 C -0.113 4.113 17 C -0.162 4.162 18 C -0.163 4.163 19 H 0.047 0.953 20 H 0.041 0.959 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.149 0.851 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.933 -0.829 -11.120 11.531 hybrid contribution 1.041 0.053 1.572 1.886 sum 3.974 -0.776 -9.549 10.372 Atomic orbital electron populations 1.21640 0.97899 0.98308 0.99469 1.18859 0.92469 0.91580 0.85875 0.99776 1.21718 1.31835 1.12768 0.92199 0.92698 1.25700 0.95136 0.95669 1.01905 1.70008 1.37213 1.23930 1.24207 0.85593 0.78663 0.78722 0.78529 1.19748 1.20753 1.19688 1.60483 1.37460 1.20472 1.09488 1.21929 0.92318 0.95315 0.95140 1.21361 0.98484 0.95218 1.01474 1.23932 0.95605 1.01429 1.04596 1.21938 1.02137 0.95670 0.91568 1.21213 1.01254 0.92122 1.01660 1.21308 1.01649 0.99841 0.93494 0.95343 0.95918 0.92601 0.92802 0.85127 0.91770 0.93568 0.90866 0.90357 0.88503 0.92652 0.90719 0.93670 0.92123 0.90728 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.87 8.97 71.98 0.65 -5.22 16 2 C 0.22 11.43 2.07 44.17 0.09 11.52 16 3 H -0.02 -0.88 6.39 -2.39 -0.02 -0.89 16 4 C -0.55 -30.60 8.59 25.60 0.22 -30.38 16 5 H 0.05 3.01 7.44 -2.91 -0.02 2.99 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.91 -53.19 11.30 21.45 0.24 -52.94 16 8 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 N -0.65 -28.59 6.18 -452.10 -2.79 -31.38 16 13 C 0.05 1.68 2.65 3.53 0.01 1.69 16 14 C -0.11 -3.80 7.66 71.98 0.55 -3.25 16 15 C -0.22 -7.04 9.18 30.59 0.28 -6.76 16 16 C -0.11 -3.28 2.70 -52.18 -0.14 -3.42 16 17 C -0.11 -2.87 9.08 71.98 0.65 -2.22 16 18 C -0.11 -2.42 8.85 71.98 0.64 -1.78 16 19 H 0.03 1.30 6.41 -2.39 -0.02 1.28 16 20 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.06 3.12 5.99 -2.38 -0.01 3.10 16 22 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 23 H 0.33 14.53 7.06 -89.69 -0.63 13.90 16 24 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 1.91 5.08 -2.38 -0.01 1.89 16 26 H 0.07 2.15 7.53 -2.39 -0.02 2.14 16 27 H 0.08 2.68 8.03 -2.39 -0.02 2.66 16 28 H 0.10 2.87 7.99 -2.39 -0.02 2.85 16 29 H 0.05 1.61 8.14 -2.38 -0.02 1.60 16 30 H 0.07 1.63 7.92 -2.39 -0.02 1.61 16 31 H 0.04 1.29 7.55 -2.39 -0.02 1.27 16 32 H 0.06 1.30 7.56 -2.39 -0.02 1.28 16 33 H 0.07 1.40 7.92 -2.39 -0.02 1.39 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -59.60 267.14 3.30 -56.29 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.43 Total: 20.57 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 3.40 Total: -38.50 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -2.55 Total: -84.33 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -59.60 3.30 -56.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642862587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.664 kcal (2) G-P(sol) polarization free energy of solvation -59.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds