Wall clock time and date at job start Mon Mar 30 2020 02:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48496 * 109.47491 * 239.99842 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99948 * 3 2 1 7 7 C 1.40517 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.38453 * 119.99814 * 0.27800 * 7 2 1 10 10 C 1.38846 * 119.99964 * 179.72322 * 9 7 2 11 11 C 1.40342 * 120.00070 * 180.02562 * 10 9 7 12 12 C 1.39052 * 126.15663 * 179.71185 * 11 10 9 13 13 C 1.39895 * 106.51069 * 179.90251 * 12 11 10 14 14 C 1.35711 * 107.29189 * 0.36243 * 13 12 11 15 15 Cl 1.73603 * 125.44320 * 179.79607 * 14 13 12 16 16 O 1.34223 * 109.11360 * 359.76796 * 14 13 12 17 17 H 0.97005 * 120.00011 * 0.02562 * 1 2 3 18 18 H 1.08002 * 120.00290 * 359.72522 * 9 7 2 19 19 H 1.08001 * 120.00274 * 359.97438 * 10 9 7 20 20 H 1.07993 * 126.74372 * 0.02562 * 12 11 10 21 21 H 1.07996 * 126.35334 * 180.12577 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6965 -1.2124 5 1 1.2754 2.7465 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0091 -1.2169 0.0005 8 1 3.0891 -1.2168 0.0001 9 6 1.3168 -2.4159 -0.0047 10 6 2.0111 -3.6183 -0.0100 11 6 1.3094 -4.8337 -0.0159 12 6 1.8715 -6.1055 -0.0272 13 6 0.8055 -7.0114 -0.0272 14 6 -0.3410 -6.2852 -0.0244 15 17 -1.9483 -6.9413 -0.0282 16 8 -0.0336 -4.9787 -0.0175 17 1 -0.4850 0.8401 -0.0004 18 1 0.2368 -2.4160 -0.0048 19 1 3.0911 -3.6184 -0.0104 20 1 2.9242 -6.3466 -0.0327 21 1 0.8809 -8.0887 -0.0326 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687678755.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:56 Heat of formation + Delta-G solvation = -20.361866 kcal Electronic energy + Delta-G solvation = -9752.719481 eV Core-core repulsion = 7619.978347 eV Total energy + Delta-G solvation = -2132.741133 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 198.019 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.86928 -37.66720 -36.76347 -34.05390 -33.50424 -30.21580 -26.69810 -23.10913 -22.42474 -20.56752 -19.21898 -18.15556 -16.93599 -16.85909 -15.84417 -14.95391 -14.08724 -13.85346 -13.57657 -13.37785 -13.25153 -12.97321 -12.67224 -12.12629 -11.90477 -11.80931 -11.72262 -10.92227 -10.44932 -9.16697 -8.85760 -6.50774 0.41726 0.61320 1.31824 1.34432 1.52429 1.66933 2.06826 2.28065 3.04030 3.18752 4.26021 4.55121 4.72126 4.78405 5.07548 5.11930 5.50922 5.56246 5.77714 5.94809 6.16647 6.40233 6.63935 6.74173 7.83935 Molecular weight = 198.02amu Principal moments of inertia in cm(-1) A = 0.067526 B = 0.007444 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.557534 B = 3760.335774 C = 4165.044738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.023 3.977 3 Si 1.012 2.988 4 H -0.249 1.249 5 H -0.259 1.259 6 H -0.248 1.248 7 C -0.408 4.408 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.425 4.425 11 C 0.147 3.853 12 C -0.351 4.351 13 C -0.122 4.122 14 C -0.102 4.102 15 Cl 0.003 6.997 16 O -0.217 6.217 17 H 0.312 0.688 18 H 0.067 0.933 19 H 0.120 0.880 20 H 0.151 0.849 21 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 -1.133 -0.023 1.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.201 4.201 3 Si 0.829 3.171 4 H -0.172 1.172 5 H -0.182 1.182 6 H -0.172 1.172 7 C -0.433 4.433 8 H 0.120 0.880 9 C 0.042 3.958 10 C -0.446 4.446 11 C 0.097 3.903 12 C -0.370 4.370 13 C -0.142 4.142 14 C -0.174 4.174 15 Cl 0.031 6.969 16 O -0.119 6.119 17 H 0.124 0.876 18 H 0.086 0.914 19 H 0.138 0.862 20 H 0.169 0.831 21 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.035 -0.857 -0.023 0.858 hybrid contribution -0.223 0.242 -0.002 0.329 sum -0.188 -0.616 -0.024 0.644 Atomic orbital electron populations 1.69571 1.10182 1.33876 1.27646 1.27773 0.95842 1.06934 0.89530 0.84786 0.78599 0.72559 0.81195 1.17221 1.18247 1.17195 1.20275 0.97020 0.91324 1.34639 0.87994 1.20820 0.96494 0.93275 0.85238 1.19402 0.96576 0.87896 1.40682 1.20359 0.77580 0.96765 0.95560 1.21752 0.99755 0.90379 1.25117 1.21305 0.89172 1.00577 1.03123 1.22308 0.88244 0.82218 1.24655 1.98295 1.19960 1.80755 1.97877 1.83965 1.25990 1.26612 1.75356 0.87607 0.91446 0.86231 0.83115 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.24 12.85 21.93 0.28 -36.95 14 2 C 0.02 1.00 5.50 85.43 0.47 1.47 14 3 Si 1.01 31.75 29.57 68.60 2.03 33.78 14 4 H -0.25 -7.51 7.11 99.48 0.71 -6.80 14 5 H -0.26 -7.54 7.11 99.48 0.71 -6.83 14 6 H -0.25 -7.50 7.11 99.48 0.71 -6.79 14 7 C -0.41 -20.03 9.01 22.88 0.21 -19.82 14 8 H 0.10 4.61 7.85 -2.91 -0.02 4.59 14 9 C 0.06 3.48 9.03 22.47 0.20 3.68 14 10 C -0.42 -22.25 9.65 22.93 0.22 -22.03 14 11 C 0.15 7.57 6.84 22.98 0.16 7.73 14 12 C -0.35 -15.72 10.93 22.87 0.25 -15.47 14 13 C -0.12 -4.94 10.83 22.09 0.24 -4.71 14 14 C -0.10 -4.50 7.93 67.23 0.53 -3.97 14 15 Cl 0.00 0.10 29.30 -2.72 -0.08 0.02 14 16 O -0.22 -11.35 10.22 -9.53 -0.10 -11.44 14 17 H 0.31 12.70 8.29 -92.70 -0.77 11.93 14 18 H 0.07 3.95 7.09 -2.91 -0.02 3.93 14 19 H 0.12 5.92 8.06 -2.91 -0.02 5.89 14 20 H 0.15 6.00 8.06 -2.91 -0.02 5.98 14 21 H 0.17 5.47 8.06 -2.91 -0.02 5.45 14 Total: -1.00 -56.03 220.37 5.65 -50.38 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 1.24 Total: 17.34 kcal Atomic # 6 Polarization: -55.40 SS G_CDS: 2.28 Total: -53.12 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.28 Total: -36.95 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.10 Total: -11.44 kcal Atomic # 14 Polarization: 31.75 SS G_CDS: 2.03 Total: 33.78 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.08 Total: 0.02 kcal Total: -56.03 5.65 -50.38 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678755.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.014 kcal (2) G-P(sol) polarization free energy of solvation -56.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds