Wall clock time and date at job start Mon Mar 30 2020 01:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46866 * 2 1 4 4 C 1.53002 * 109.46873 * 240.00214 * 2 1 3 5 5 C 1.53009 * 109.46650 * 175.00002 * 4 2 1 6 6 C 1.53002 * 109.46650 * 179.97438 * 5 4 2 7 7 C 1.53006 * 117.49614 * 243.62067 * 6 5 4 8 8 C 1.52999 * 117.49613 * 175.00071 * 6 5 4 9 9 N 1.46501 * 109.47235 * 120.00063 * 2 1 3 10 10 C 1.46497 * 119.99428 * 59.99978 * 9 2 1 11 11 C 1.36928 * 119.99987 * 240.00275 * 9 2 1 12 12 H 1.07999 * 120.00249 * 21.90673 * 11 9 2 13 13 C 1.38813 * 119.99759 * 201.91070 * 11 9 2 14 14 N 1.31621 * 119.99934 * 12.72736 * 13 11 9 15 15 Si 1.86802 * 120.00020 * 192.73266 * 13 11 9 16 16 H 1.48498 * 109.47288 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47278 * 119.99936 * 15 13 11 18 18 H 1.48506 * 109.46994 * 239.99923 * 15 13 11 19 19 H 1.09004 * 109.46864 * 59.99573 * 1 2 3 20 20 H 1.08994 * 109.46963 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46955 * 300.00200 * 1 2 3 22 22 H 1.08999 * 109.47447 * 294.99847 * 4 2 1 23 23 H 1.08996 * 109.47024 * 55.00421 * 4 2 1 24 24 H 1.09000 * 109.46977 * 299.99529 * 5 4 2 25 25 H 1.08996 * 109.47065 * 60.00444 * 5 4 2 26 26 H 1.08998 * 115.55280 * 29.32843 * 6 5 4 27 27 H 1.08992 * 117.49799 * 0.02562 * 7 6 5 28 28 H 1.09004 * 117.49427 * 145.02637 * 7 6 5 29 29 H 1.09003 * 117.49872 * 214.97942 * 8 6 5 30 30 H 1.08999 * 117.50075 * 0.02562 * 8 6 5 31 31 H 1.08995 * 109.47434 * 94.32111 * 10 9 2 32 32 H 1.09006 * 109.47241 * 214.31645 * 10 9 2 33 33 H 1.09006 * 109.47727 * 334.31589 * 10 9 2 34 34 H 0.97009 * 119.99739 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0749 -1.3350 -2.5627 7 6 4.9767 -2.5536 -2.3556 8 6 5.5705 -1.2413 -2.8715 9 7 2.0184 -0.6906 1.1962 10 6 1.6645 -2.0932 1.4279 11 6 2.8056 -0.0252 2.0975 12 1 2.7851 1.0538 2.1391 13 6 3.6300 -0.7374 2.9577 14 7 3.8493 -2.0183 2.7489 15 14 4.4281 0.1220 4.4117 16 1 4.0254 1.5512 4.4239 17 1 3.9887 -0.5275 5.6728 18 1 5.9053 0.0255 4.2938 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.7517 -1.7715 -1.2057 23 1 1.6054 -0.2616 -2.1369 24 1 3.8532 0.4371 -1.3574 25 1 3.9995 -1.0728 -0.4260 26 1 3.3868 -1.3555 -3.4077 27 1 5.2062 -2.8413 -1.3297 28 1 4.8818 -3.3761 -3.0646 29 1 5.8664 -1.2004 -3.9198 30 1 6.1911 -0.6658 -2.1846 31 1 2.4539 -2.7362 1.0389 32 1 1.5487 -2.2668 2.4978 33 1 0.7273 -2.3203 0.9195 34 1 4.4257 -2.5160 3.3499 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691650434.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:31 Heat of formation + Delta-G solvation = 29.314232 kcal Electronic energy + Delta-G solvation = -13109.828210 eV Core-core repulsion = 11043.749975 eV Total energy + Delta-G solvation = -2066.078235 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.53683 -36.11397 -32.68675 -30.10045 -28.60310 -25.89285 -23.80881 -22.48660 -21.95000 -19.76798 -18.74831 -16.75775 -15.21201 -15.02064 -14.15375 -13.83764 -13.25968 -12.93080 -12.49298 -12.29720 -11.59311 -11.55271 -11.16235 -10.91662 -10.78649 -10.70575 -10.48341 -10.38502 -10.22432 -10.06068 -9.69552 -9.58497 -9.50152 -9.24859 -8.44793 -6.63367 -5.62605 -3.06177 3.41877 3.49483 3.51041 4.24484 4.56967 5.13016 5.38194 5.40942 5.51255 5.57071 5.81197 5.89127 5.97067 6.14825 6.18048 6.25559 6.33901 6.42972 6.54794 6.61524 6.62552 6.68369 6.80807 6.92856 7.09313 7.19701 7.37017 7.51761 7.84196 7.90579 8.50255 9.34863 9.99716 10.49344 11.41926 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.012511 C = 0.009874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.660903 B = 2237.575333 C = 2835.111716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.168 3.832 3 H 0.059 0.941 4 C -0.122 4.122 5 C -0.081 4.081 6 C -0.144 4.144 7 C -0.181 4.181 8 C -0.189 4.189 9 N -0.595 5.595 10 C 0.166 3.834 11 C -0.245 4.245 12 H 0.066 0.934 13 C -0.001 4.001 14 N -0.908 5.908 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.292 1.292 19 H 0.040 0.960 20 H 0.047 0.953 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.039 0.961 33 H -0.004 1.004 34 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 1.122 -8.420 8.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.060 3.940 3 H 0.077 0.923 4 C -0.162 4.162 5 C -0.119 4.119 6 C -0.163 4.163 7 C -0.218 4.218 8 C -0.226 4.226 9 N -0.317 5.317 10 C 0.021 3.979 11 C -0.375 4.375 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.554 5.554 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.219 1.219 19 H 0.059 0.941 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.015 0.985 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.368 1.009 -8.305 8.477 hybrid contribution 0.556 0.275 0.778 0.995 sum -0.812 1.283 -7.527 7.679 Atomic orbital electron populations 1.22264 0.98962 1.00836 0.99923 1.20401 0.91327 0.95613 0.86617 0.92294 1.22019 0.95451 1.00823 0.97892 1.21086 0.95991 0.98977 0.95807 1.22447 0.92015 1.01325 1.00471 1.23005 1.04994 0.91308 1.02482 1.22910 0.97104 1.01745 1.00879 1.43931 1.57685 1.09502 1.20626 1.20702 0.93733 0.84808 0.98662 1.19253 1.16190 0.90882 1.11168 0.91633 1.24945 0.98212 0.96162 1.00530 1.70087 1.40145 1.07346 1.37819 0.86263 0.78869 0.78857 0.83058 1.20479 1.21823 1.21931 0.94094 0.93380 0.93181 0.92731 0.93993 0.92987 0.89269 0.88924 0.88320 0.89799 0.89760 0.89030 0.95501 0.94198 0.98510 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.18 37.16 0.34 -2.56 16 2 C 0.17 3.50 2.71 -67.93 -0.18 3.31 16 3 H 0.06 1.25 7.86 -51.93 -0.41 0.84 16 4 C -0.12 -2.29 4.60 -26.73 -0.12 -2.41 16 5 C -0.08 -1.57 5.38 -26.73 -0.14 -1.71 16 6 C -0.14 -2.37 5.74 -90.62 -0.52 -2.89 16 7 C -0.18 -2.91 10.18 -26.73 -0.27 -3.18 16 8 C -0.19 -2.84 10.25 -26.73 -0.27 -3.12 16 9 N -0.59 -14.84 2.27 -173.48 -0.39 -15.23 16 10 C 0.17 4.14 7.91 59.85 0.47 4.61 16 11 C -0.25 -6.73 9.60 -15.06 -0.14 -6.87 16 12 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 13 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 14 N -0.91 -26.43 10.63 55.49 0.59 -25.84 16 15 Si 0.90 22.11 29.57 -169.99 -5.03 17.08 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 20 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 21 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 22 H 0.05 1.07 7.51 -51.93 -0.39 0.68 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.09 2.12 7.48 -51.93 -0.39 1.73 16 26 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 27 H 0.10 1.79 8.03 -51.93 -0.42 1.37 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.03 0.72 7.42 -51.93 -0.39 0.34 16 32 H 0.04 1.08 7.20 -51.93 -0.37 0.70 16 33 H 0.00 -0.08 6.43 -51.93 -0.33 -0.41 16 34 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 274.23 15.07 4.13 4.13 Total: -1.00 -28.39 274.23 -7.60 -35.99 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.97 Total: -1.19 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.94 Total: -14.94 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.20 Total: -41.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.39 -7.60 -35.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691650434.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.307 kcal (2) G-P(sol) polarization free energy of solvation -28.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds