Wall clock time and date at job start Mon Mar 30 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46866 * 2 1 4 4 C 1.53002 * 109.46873 * 240.00214 * 2 1 3 5 5 C 1.53009 * 109.46650 * 175.00002 * 4 2 1 6 6 C 1.53002 * 109.46650 * 179.97438 * 5 4 2 7 7 C 1.53006 * 117.49614 * 243.62067 * 6 5 4 8 8 C 1.52999 * 117.49613 * 175.00071 * 6 5 4 9 9 N 1.46501 * 109.47235 * 120.00063 * 2 1 3 10 10 C 1.46497 * 119.99428 * 59.99978 * 9 2 1 11 11 C 1.36928 * 119.99987 * 240.00275 * 9 2 1 12 12 H 1.07999 * 120.00249 * 21.90673 * 11 9 2 13 13 C 1.38813 * 119.99759 * 201.91070 * 11 9 2 14 14 N 1.31621 * 119.99934 * 12.72736 * 13 11 9 15 15 Si 1.86802 * 120.00020 * 192.73266 * 13 11 9 16 16 H 1.48498 * 109.47288 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47278 * 119.99936 * 15 13 11 18 18 H 1.48506 * 109.46994 * 239.99923 * 15 13 11 19 19 H 1.09004 * 109.46864 * 59.99573 * 1 2 3 20 20 H 1.08994 * 109.46963 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46955 * 300.00200 * 1 2 3 22 22 H 1.08999 * 109.47447 * 294.99847 * 4 2 1 23 23 H 1.08996 * 109.47024 * 55.00421 * 4 2 1 24 24 H 1.09000 * 109.46977 * 299.99529 * 5 4 2 25 25 H 1.08996 * 109.47065 * 60.00444 * 5 4 2 26 26 H 1.08998 * 115.55280 * 29.32843 * 6 5 4 27 27 H 1.08992 * 117.49799 * 0.02562 * 7 6 5 28 28 H 1.09004 * 117.49427 * 145.02637 * 7 6 5 29 29 H 1.09003 * 117.49872 * 214.97942 * 8 6 5 30 30 H 1.08999 * 117.50075 * 0.02562 * 8 6 5 31 31 H 1.08995 * 109.47434 * 94.32111 * 10 9 2 32 32 H 1.09006 * 109.47241 * 214.31645 * 10 9 2 33 33 H 1.09006 * 109.47727 * 334.31589 * 10 9 2 34 34 H 0.97009 * 119.99739 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0749 -1.3350 -2.5627 7 6 4.9767 -2.5536 -2.3556 8 6 5.5705 -1.2413 -2.8715 9 7 2.0184 -0.6906 1.1962 10 6 1.6645 -2.0932 1.4279 11 6 2.8056 -0.0252 2.0975 12 1 2.7851 1.0538 2.1391 13 6 3.6300 -0.7374 2.9577 14 7 3.8493 -2.0183 2.7489 15 14 4.4281 0.1220 4.4117 16 1 4.0254 1.5512 4.4239 17 1 3.9887 -0.5275 5.6728 18 1 5.9053 0.0255 4.2938 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.7517 -1.7715 -1.2057 23 1 1.6054 -0.2616 -2.1369 24 1 3.8532 0.4371 -1.3574 25 1 3.9995 -1.0728 -0.4260 26 1 3.3868 -1.3555 -3.4077 27 1 5.2062 -2.8413 -1.3297 28 1 4.8818 -3.3761 -3.0646 29 1 5.8664 -1.2004 -3.9198 30 1 6.1911 -0.6658 -2.1846 31 1 2.4539 -2.7362 1.0389 32 1 1.5487 -2.2668 2.4978 33 1 0.7273 -2.3203 0.9195 34 1 4.4257 -2.5160 3.3499 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691650434.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:30 Heat of formation + Delta-G solvation = 14.840607 kcal Electronic energy + Delta-G solvation = -13110.455833 eV Core-core repulsion = 11043.749975 eV Total energy + Delta-G solvation = -2066.705859 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.05680 -37.72589 -34.59386 -31.93856 -30.24872 -27.97830 -25.45100 -24.30028 -23.19594 -21.15294 -20.49296 -18.79829 -17.05315 -16.47665 -15.91339 -15.41463 -15.07067 -14.54281 -14.17303 -14.06693 -13.36087 -13.16838 -12.82364 -12.58548 -12.42525 -12.34370 -12.29789 -12.10439 -11.93854 -11.79951 -11.57820 -11.27401 -10.94750 -10.63336 -10.55952 -8.68821 -7.76042 -5.21003 1.44387 1.46178 1.55673 2.53352 2.96761 3.36833 3.71643 3.84820 4.09842 4.12027 4.32106 4.44982 4.61679 4.68710 4.78031 4.79540 4.86216 4.98648 5.01390 5.10447 5.17262 5.23888 5.29683 5.33699 5.34035 5.56738 5.65382 5.68513 5.75804 5.80173 6.39630 7.22619 7.97901 8.41388 9.26760 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.012511 C = 0.009874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.660903 B = 2237.575333 C = 2835.111716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 H 0.053 0.947 4 C -0.113 4.113 5 C -0.074 4.074 6 C -0.150 4.150 7 C -0.189 4.189 8 C -0.175 4.175 9 N -0.607 5.607 10 C 0.185 3.815 11 C -0.250 4.250 12 H 0.066 0.934 13 C -0.054 4.054 14 N -0.937 5.937 15 Si 0.959 3.041 16 H -0.268 1.268 17 H -0.294 1.294 18 H -0.295 1.295 19 H 0.075 0.925 20 H 0.047 0.953 21 H 0.040 0.960 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.119 0.881 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.079 0.921 31 H -0.001 1.001 32 H 0.010 0.990 33 H 0.026 0.974 34 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 2.071 -10.202 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.052 3.948 3 H 0.071 0.929 4 C -0.152 4.152 5 C -0.112 4.112 6 C -0.168 4.168 7 C -0.226 4.226 8 C -0.212 4.212 9 N -0.330 5.330 10 C 0.040 3.960 11 C -0.380 4.380 12 H 0.084 0.916 13 C -0.249 4.249 14 N -0.585 5.585 15 Si 0.789 3.211 16 H -0.192 1.192 17 H -0.221 1.221 18 H -0.223 1.223 19 H 0.094 0.906 20 H 0.066 0.934 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.137 0.863 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.097 0.903 31 H 0.017 0.983 32 H 0.029 0.971 33 H 0.045 0.955 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.119 1.985 -10.107 10.516 hybrid contribution 0.762 0.015 1.291 1.499 sum -1.357 2.000 -8.816 9.141 Atomic orbital electron populations 1.22130 0.96294 1.01225 1.01256 1.20685 0.93239 0.95035 0.85874 0.92874 1.21909 0.94872 1.00195 0.98204 1.20910 0.96489 0.98613 0.95183 1.22423 0.93344 1.01180 0.99805 1.22982 1.05677 0.92564 1.01423 1.22991 0.95770 1.00091 1.02330 1.44128 1.57488 1.09400 1.21982 1.20372 0.94053 0.84791 0.96821 1.19533 1.15867 0.91081 1.11537 0.91620 1.25646 0.99342 0.96859 1.03051 1.70254 1.41059 1.08599 1.38544 0.85308 0.77537 0.78410 0.79880 1.19213 1.22090 1.22287 0.90574 0.93388 0.94079 0.93663 0.90300 0.93234 0.94680 0.86289 0.91686 0.87295 0.86534 0.90279 0.98306 0.97135 0.95528 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.18 71.98 0.66 -4.35 16 2 C 0.16 6.35 2.71 44.99 0.12 6.47 16 3 H 0.05 2.18 7.86 -2.39 -0.02 2.16 16 4 C -0.11 -4.01 4.60 30.60 0.14 -3.86 16 5 C -0.07 -2.85 5.38 30.60 0.16 -2.68 16 6 C -0.15 -4.63 5.74 -10.79 -0.06 -4.70 16 7 C -0.19 -5.94 10.18 30.60 0.31 -5.63 16 8 C -0.17 -4.91 10.25 30.59 0.31 -4.60 16 9 N -0.61 -30.51 2.27 -702.77 -1.59 -32.11 16 10 C 0.18 9.40 7.91 127.77 1.01 10.41 16 11 C -0.25 -13.89 9.60 84.04 0.81 -13.08 16 12 H 0.07 3.59 7.81 -2.91 -0.02 3.56 16 13 C -0.05 -3.11 5.10 84.86 0.43 -2.67 16 14 N -0.94 -56.52 10.63 21.65 0.23 -56.29 16 15 Si 0.96 46.27 29.57 68.60 2.03 48.30 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 18 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 19 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 20 H 0.05 1.59 6.66 -2.39 -0.02 1.58 16 21 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 22 H 0.04 1.70 7.51 -2.39 -0.02 1.68 16 23 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.03 1.72 7.48 -2.39 -0.02 1.70 16 26 H 0.12 3.11 8.07 -2.39 -0.02 3.09 16 27 H 0.06 2.47 8.03 -2.39 -0.02 2.45 16 28 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 29 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 32 H 0.01 0.56 7.20 -2.38 -0.02 0.54 16 33 H 0.03 1.16 6.43 -2.38 -0.02 1.15 16 34 H 0.24 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -62.39 274.23 5.60 -56.79 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.03 Total: 8.00 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 3.90 Total: -24.69 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -1.36 Total: -88.39 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -62.39 5.60 -56.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691650434.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.630 kcal (2) G-P(sol) polarization free energy of solvation -62.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds