Wall clock time and date at job start Mon Mar 30 2020 02:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 N 1.46900 * 109.46619 * 294.99903 * 4 2 1 6 6 C 1.46907 * 110.99641 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47010 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00127 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00044 * 179.97438 * 7 6 5 10 10 N 1.31506 * 119.99992 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99973 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47291 * 90.00108 * 11 9 7 13 13 H 1.48499 * 109.46994 * 210.00204 * 11 9 7 14 14 H 1.48506 * 109.47242 * 329.99750 * 11 9 7 15 15 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 16 16 C 1.53779 * 113.61807 * 157.49918 * 15 2 1 17 17 C 1.53775 * 87.08445 * 220.02120 * 16 15 2 18 18 C 1.53780 * 87.08291 * 25.43110 * 17 16 15 19 19 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 20 20 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 22 22 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 23 23 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 24 24 H 1.00900 * 111.00289 * 56.04740 * 5 4 2 25 25 H 1.08997 * 109.46942 * 299.99950 * 6 5 4 26 26 H 1.09003 * 109.47142 * 59.99974 * 6 5 4 27 27 H 0.97001 * 120.00458 * 179.97438 * 10 9 7 28 28 H 1.09006 * 112.85292 * 288.81039 * 15 2 1 29 29 H 1.09003 * 113.61460 * 334.56934 * 16 15 2 30 30 H 1.08997 * 113.61480 * 105.47119 * 16 15 2 31 31 H 1.09008 * 113.61327 * 270.88310 * 17 16 15 32 32 H 1.08999 * 113.69441 * 139.99189 * 17 16 15 33 33 H 1.08996 * 113.61725 * 220.02384 * 18 17 16 34 34 H 1.08991 * 113.69226 * 89.12796 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.1248 -0.6272 3.6672 7 6 1.7088 0.1787 4.8708 8 1 1.1492 1.0932 4.7413 9 6 2.0427 -0.2517 6.1375 10 7 2.7246 -1.3650 6.2952 11 14 1.5265 0.7468 7.6294 12 1 0.1929 0.2883 8.0947 13 1 2.5207 0.5619 8.7169 14 1 1.4557 2.1842 7.2628 15 6 2.0400 -0.7213 -1.2492 16 6 3.4726 -0.3278 -1.6461 17 6 2.9922 -0.3574 -3.1066 18 6 1.5811 -0.0723 -2.5658 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.6054 -1.7198 1.2951 23 1 3.1263 -0.7995 1.2055 24 1 0.6529 0.1793 2.4753 25 1 1.6904 -1.6249 3.7296 26 1 3.2117 -0.7051 3.6405 27 1 2.9598 -1.6676 7.1863 28 1 1.8757 -1.7983 -1.2129 29 1 3.7640 0.6647 -1.3023 30 1 4.2151 -1.0917 -1.4152 31 1 3.0896 -1.3351 -3.5786 32 1 3.3970 0.4496 -3.7173 33 1 0.7966 -0.6299 -3.0772 34 1 1.3539 0.9896 -2.4731 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692913758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:34 Heat of formation + Delta-G solvation = -5.126891 kcal Electronic energy + Delta-G solvation = -12455.305922 eV Core-core repulsion = 10387.734208 eV Total energy + Delta-G solvation = -2067.571714 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.16279 -35.69796 -33.01979 -31.31130 -27.10684 -26.04385 -25.12275 -23.70672 -21.37330 -19.99298 -19.27078 -16.42969 -15.41082 -15.13182 -14.89317 -14.34242 -13.53337 -13.12203 -12.86760 -12.39546 -12.36196 -12.21822 -11.58791 -11.55827 -11.27113 -10.80522 -10.78285 -10.61015 -10.52401 -10.25220 -10.10991 -9.87774 -9.63927 -9.08199 -8.45089 -7.21201 -6.00036 -4.01894 3.33726 3.39506 3.44468 4.45410 4.66803 4.72039 4.79293 4.92593 5.31339 5.35732 5.42247 5.63297 5.67034 5.70296 5.79505 5.82657 5.90172 6.01071 6.07158 6.13387 6.23972 6.39204 6.41889 6.51817 6.65145 6.78697 7.32252 7.47849 7.82838 8.17874 8.46884 8.68524 9.07851 9.62945 11.11201 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.076485 B = 0.006025 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.995977 B = 4646.320554 C = 4822.258831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 H 0.076 0.924 4 C 0.065 3.935 5 N -0.691 5.691 6 C 0.193 3.807 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.899 3.101 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.103 4.103 16 C -0.136 4.136 17 C -0.145 4.145 18 C -0.135 4.135 19 H 0.049 0.951 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.015 0.985 23 H 0.062 0.938 24 H 0.327 0.673 25 H -0.015 1.015 26 H 0.027 0.973 27 H 0.261 0.739 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 1.274 -15.482 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.065 4.065 5 N -0.322 5.322 6 C 0.066 3.934 7 C -0.552 4.552 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.727 3.273 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.122 4.122 16 C -0.174 4.174 17 C -0.182 4.182 18 C -0.172 4.172 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.078 0.922 22 H 0.033 0.967 23 H 0.080 0.920 24 H 0.144 0.856 25 H 0.002 0.998 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.309 1.582 -15.363 15.500 hybrid contribution -0.780 -0.420 0.979 1.321 sum -2.089 1.162 -14.384 14.581 Atomic orbital electron populations 1.21803 0.95793 1.01265 1.01465 1.21164 0.95325 0.99944 0.93403 0.90588 1.21883 0.99949 0.94178 0.90466 1.60705 1.18506 1.50535 1.02496 1.19544 0.95992 0.92201 0.85644 1.21209 1.35090 1.08467 0.90428 0.92005 1.24997 0.95281 0.95204 0.99144 1.69964 1.39244 1.21985 1.22657 0.86485 0.78151 0.80529 0.82162 1.20739 1.21244 1.19763 1.22557 0.95964 0.99735 0.93964 1.22947 0.96791 1.02015 0.95621 1.22819 0.97250 1.01375 0.96768 1.22905 0.96449 1.00995 0.96863 0.93147 0.93331 0.92165 0.96723 0.91984 0.85578 0.99762 0.95526 0.92948 0.89711 0.89968 0.91769 0.90634 0.91890 0.92038 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.77 37.16 0.33 -1.65 16 2 C -0.08 -1.17 2.34 -90.62 -0.21 -1.38 16 3 H 0.08 1.17 7.94 -51.93 -0.41 0.76 16 4 C 0.07 1.21 5.14 -3.82 -0.02 1.19 16 5 N -0.69 -15.44 6.49 -115.05 -0.75 -16.19 16 6 C 0.19 5.26 5.44 -4.97 -0.03 5.23 16 7 C -0.51 -14.96 9.32 -34.44 -0.32 -15.28 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 11 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 C -0.10 -1.28 3.13 -89.81 -0.28 -1.56 16 16 C -0.14 -1.60 7.63 -25.92 -0.20 -1.80 16 17 C -0.14 -1.45 8.08 -25.92 -0.21 -1.66 16 18 C -0.13 -1.42 6.68 -25.92 -0.17 -1.59 16 19 H 0.05 0.59 7.45 -51.93 -0.39 0.20 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.87 6.68 -51.93 -0.35 0.53 16 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.33 6.96 6.97 -39.29 -0.27 6.69 16 25 H -0.02 -0.44 8.14 -51.93 -0.42 -0.87 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -30.08 275.26 -8.12 -38.20 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.03 Total: 0.52 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.21 Total: -16.99 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.01 Total: -42.89 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.08 -8.12 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692913758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.075 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds