Wall clock time and date at job start Mon Mar 30 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46791 * 2 1 4 4 C 1.52996 * 109.47422 * 239.99428 * 2 1 3 5 5 C 1.50691 * 109.47522 * 174.99853 * 4 2 1 6 6 H 1.07997 * 119.99738 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00248 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00261 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00137 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47024 * 89.99913 * 9 7 5 11 11 H 1.48498 * 109.46976 * 210.00118 * 9 7 5 12 12 H 1.48498 * 109.46998 * 330.00076 * 9 7 5 13 13 N 1.46907 * 109.46832 * 119.99638 * 2 1 3 14 14 C 1.46900 * 110.99967 * 262.68301 * 13 2 1 15 15 C 1.53002 * 112.90574 * 54.67227 * 14 13 2 16 16 C 1.53778 * 113.61301 * 185.92434 * 14 13 2 17 17 C 1.53782 * 87.07969 * 139.98334 * 16 14 13 18 18 C 1.53778 * 113.61561 * 283.42317 * 14 13 2 19 19 H 1.09003 * 109.47490 * 306.19659 * 1 2 3 20 20 H 1.08998 * 109.47409 * 66.19973 * 1 2 3 21 21 H 1.09003 * 109.47185 * 186.20231 * 1 2 3 22 22 H 1.09003 * 109.47513 * 295.00751 * 4 2 1 23 23 H 1.09007 * 109.46619 * 54.99542 * 4 2 1 24 24 H 0.97000 * 120.00844 * 180.02562 * 8 7 5 25 25 H 1.00900 * 110.99916 * 26.63878 * 13 2 1 26 26 H 1.09001 * 109.47152 * 185.44541 * 15 14 13 27 27 H 1.08996 * 109.47101 * 305.44444 * 15 14 13 28 28 H 1.09000 * 109.47255 * 65.44910 * 15 14 13 29 29 H 1.09003 * 113.61436 * 254.52635 * 16 14 13 30 30 H 1.08990 * 113.61744 * 25.43559 * 16 14 13 31 31 H 1.09003 * 113.61506 * 89.11505 * 17 16 14 32 32 H 1.09000 * 113.61493 * 220.01694 * 17 16 14 33 33 H 1.09000 * 113.61587 * 334.56918 * 18 14 13 34 34 H 1.09004 * 113.61702 * 105.47257 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3581 8 7 3.5763 -1.8363 -3.3003 9 14 6.0921 -1.0616 -2.4365 10 1 6.6999 -2.2147 -1.7253 11 1 6.5295 -1.0687 -3.8556 12 1 6.5268 0.2031 -1.7909 13 7 2.0196 -0.6925 1.1996 14 6 2.3597 0.2666 2.2590 15 6 1.2038 1.2078 2.6038 16 6 3.0141 -0.3821 3.4902 17 6 3.9504 0.8369 3.5370 18 6 3.6963 0.9912 2.0282 19 1 -0.3634 0.6069 0.8293 20 1 -0.3634 0.4147 -0.9402 21 1 -0.3634 -1.0217 0.1110 22 1 1.7516 -1.7716 -1.2055 23 1 1.6053 -0.2619 -2.1369 24 1 4.0606 -2.2432 -4.0357 25 1 1.3463 -1.3690 1.5267 26 1 1.5445 1.9537 3.3220 27 1 0.8589 1.7065 1.6981 28 1 0.3847 0.6339 3.0370 29 1 2.3490 -0.4550 4.3507 30 1 3.5269 -1.3183 3.2698 31 1 3.5618 1.6634 4.1320 32 1 4.9823 0.5857 3.7825 33 1 4.3956 0.4304 1.4080 34 1 3.5819 2.0270 1.7084 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809804.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:04 Heat of formation + Delta-G solvation = -13.746266 kcal Electronic energy + Delta-G solvation = -13197.741752 eV Core-core repulsion = 11129.796273 eV Total energy + Delta-G solvation = -2067.945478 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.56310 -36.96223 -34.54827 -31.22581 -29.24991 -28.88030 -26.52947 -25.02091 -23.67265 -21.21972 -19.18080 -18.42124 -17.15510 -16.52124 -15.83301 -15.63329 -14.76795 -14.61212 -14.28406 -13.75782 -13.46588 -13.21742 -13.10506 -12.95695 -12.74222 -12.62520 -12.37382 -12.00158 -11.85106 -11.57241 -11.43929 -11.02193 -10.90737 -10.79093 -10.46000 -8.95213 -8.07418 -6.11313 1.40028 1.41618 1.51619 2.47749 3.24915 3.49952 3.73166 3.90818 4.04978 4.10847 4.30624 4.46921 4.57604 4.65188 4.72121 4.87333 4.95567 4.99793 5.04106 5.08792 5.17864 5.21329 5.27553 5.37292 5.49442 5.55414 5.68069 5.80707 5.93710 6.41428 6.62352 6.86976 7.03587 7.53654 9.05126 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033683 B = 0.011937 C = 0.009410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.071826 B = 2344.996318 C = 2974.856615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 H 0.052 0.948 4 C 0.037 3.963 5 C -0.493 4.493 6 H 0.061 0.939 7 C -0.010 4.010 8 N -0.943 5.943 9 Si 0.954 3.046 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.667 5.667 14 C 0.078 3.922 15 C -0.155 4.155 16 C -0.120 4.120 17 C -0.128 4.128 18 C -0.133 4.133 19 H 0.072 0.928 20 H 0.050 0.950 21 H 0.053 0.947 22 H -0.013 1.013 23 H -0.014 1.014 24 H 0.257 0.743 25 H 0.333 0.667 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 5.784 13.873 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.005 4.005 3 H 0.070 0.930 4 C 0.000 4.000 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.205 4.205 8 N -0.586 5.586 9 Si 0.780 3.220 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.297 5.297 14 C -0.014 4.014 15 C -0.214 4.214 16 C -0.157 4.157 17 C -0.165 4.165 18 C -0.172 4.172 19 H 0.091 0.909 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.005 0.995 23 H 0.004 0.996 24 H 0.066 0.934 25 H 0.152 0.848 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.508 5.646 13.486 14.834 hybrid contribution 0.040 -0.046 -0.561 0.565 sum -2.468 5.599 12.925 14.300 Atomic orbital electron populations 1.22557 0.96566 1.01827 1.02041 1.21326 0.92040 0.96306 0.90859 0.92986 1.19022 0.95222 0.94047 0.91732 1.21562 0.93393 1.31856 1.06322 0.92114 1.25876 1.02781 0.95935 0.95916 1.70102 1.36952 1.38386 1.13143 0.85607 0.80869 0.78623 0.76876 1.20439 1.21223 1.19003 1.60708 1.48254 1.16221 1.04498 1.22488 0.94111 0.93017 0.91753 1.22244 0.97810 0.99648 1.01703 1.22926 0.98523 0.97850 0.96426 1.22723 0.99993 0.98594 0.95230 1.23002 0.97542 0.99264 0.97341 0.90902 0.93108 0.92769 0.99481 0.99575 0.93437 0.84828 0.90792 0.92810 0.91554 0.89994 0.90968 0.88435 0.91207 0.92208 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.69 8.86 71.98 0.64 -5.05 16 2 C 0.10 4.28 1.94 44.91 0.09 4.37 16 3 H 0.05 2.21 6.80 -2.39 -0.02 2.19 16 4 C 0.04 2.01 4.65 29.84 0.14 2.15 16 5 C -0.49 -28.71 8.84 25.60 0.23 -28.48 16 6 H 0.06 3.46 6.35 -2.91 -0.02 3.44 16 7 C -0.01 -0.59 5.46 84.65 0.46 -0.12 16 8 N -0.94 -59.63 13.29 21.44 0.28 -59.34 16 9 Si 0.95 46.62 29.54 68.60 2.03 48.65 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.67 -24.86 5.91 -445.72 -2.63 -27.49 16 14 C 0.08 2.33 1.02 4.05 0.00 2.33 16 15 C -0.16 -3.76 7.89 71.98 0.57 -3.19 16 16 C -0.12 -3.07 7.47 31.12 0.23 -2.84 16 17 C -0.13 -3.09 7.73 31.12 0.24 -2.85 16 18 C -0.13 -4.32 6.94 31.12 0.22 -4.10 16 19 H 0.07 1.99 5.85 -2.39 -0.01 1.97 16 20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.05 1.75 8.00 -2.39 -0.02 1.73 16 22 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 23 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 24 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.33 11.37 8.29 -89.69 -0.74 10.63 16 26 H 0.07 1.51 7.31 -2.39 -0.02 1.49 16 27 H 0.05 1.41 5.56 -2.39 -0.01 1.40 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.10 1.89 7.61 -2.39 -0.02 1.88 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 2.39 6.80 -2.39 -0.02 2.37 16 34 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 Total: -1.00 -65.79 266.77 2.81 -62.98 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.32 Total: 12.98 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 2.81 Total: -37.77 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -2.35 Total: -86.83 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -65.79 2.81 -62.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809804.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.231 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds