Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46908 * 109.47004 * 120.00132 * 2 1 3 14 14 C 1.46901 * 110.99611 * 274.99818 * 13 2 1 15 15 C 1.53008 * 109.46975 * 179.97438 * 14 13 2 16 16 C 1.53006 * 115.54424 * 34.32961 * 15 14 13 17 17 C 1.52997 * 117.49827 * 248.62341 * 15 14 13 18 18 C 1.52990 * 117.50196 * 179.97438 * 15 14 13 19 19 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 20 20 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 22 22 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 23 23 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 24 24 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 25 25 H 1.00903 * 110.99875 * 38.95027 * 13 2 1 26 26 H 1.09002 * 109.47410 * 299.99608 * 14 13 2 27 27 H 1.08996 * 109.47316 * 60.00010 * 14 13 2 28 28 H 1.08996 * 109.46848 * 85.58996 * 16 15 14 29 29 H 1.09005 * 109.46229 * 205.58255 * 16 15 14 30 30 H 1.09000 * 109.47479 * 325.58120 * 16 15 14 31 31 H 1.08998 * 117.49811 * 359.97438 * 17 15 14 32 32 H 1.08998 * 117.49605 * 145.01710 * 17 15 14 33 33 H 1.08996 * 117.50452 * 214.98034 * 18 15 14 34 34 H 1.09009 * 117.49966 * 0.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 5.5420 -1.1100 -2.4075 9 14 3.3019 -2.1132 -3.6925 10 1 2.9466 -1.1695 -4.7827 11 1 4.1581 -3.1980 -4.2363 12 1 2.0626 -2.6997 -3.1220 13 7 2.0196 -0.6926 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5950 -0.5332 3.5746 16 6 3.6307 -1.6237 3.2931 17 6 1.6083 -0.7737 4.7189 18 6 2.7330 0.2516 4.8806 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.6054 -0.2618 -2.1369 23 1 1.7516 -1.7715 -1.2055 24 1 6.0266 -1.5200 -3.1409 25 1 1.4494 -1.4980 1.4101 26 1 2.7589 1.0462 2.1183 27 1 1.0871 0.6163 2.5525 28 1 4.6254 -1.1795 3.2576 29 1 3.5948 -2.3718 4.0852 30 1 3.4095 -2.0967 2.3363 31 1 0.5942 -0.3931 4.5973 32 1 1.6968 -1.7090 5.2715 33 1 3.5610 -0.0094 5.5396 34 1 2.4583 1.3064 4.8654 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = -6.966711 kcal Electronic energy + Delta-G solvation = -12770.183048 eV Core-core repulsion = 10702.531553 eV Total energy + Delta-G solvation = -2067.651495 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55085 -37.51757 -34.63319 -32.15959 -29.64858 -28.93421 -26.19789 -24.42818 -23.25065 -21.40540 -19.80589 -18.74503 -16.85310 -16.35195 -16.05243 -15.49435 -15.06958 -14.70830 -14.15599 -13.94297 -13.80411 -13.43133 -13.31199 -13.11769 -12.72493 -12.38969 -12.22194 -12.19201 -11.92842 -11.59935 -11.42740 -11.21901 -10.90644 -10.65480 -10.45446 -8.94723 -8.15211 -6.13812 1.38445 1.40873 1.52150 2.44427 2.88097 3.18059 3.40843 3.90427 4.05893 4.11372 4.20656 4.25575 4.43554 4.58338 4.68414 4.76819 4.80328 4.94890 5.01381 5.08410 5.12490 5.15958 5.25760 5.29185 5.30341 5.31656 5.54245 5.64009 5.78809 6.38229 6.54086 6.78674 6.94564 7.46521 9.02493 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041843 B = 0.009016 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.005210 B = 3104.789324 C = 3514.445501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 H 0.051 0.949 4 C -0.002 4.002 5 C -0.488 4.488 6 H 0.031 0.969 7 C -0.007 4.007 8 N -0.961 5.961 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.248 1.248 13 N -0.678 5.678 14 C 0.105 3.895 15 C -0.141 4.141 16 C -0.106 4.106 17 C -0.162 4.162 18 C -0.171 4.171 19 H 0.063 0.937 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.018 0.982 23 H 0.017 0.983 24 H 0.260 0.740 25 H 0.339 0.661 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.374 0.380 11.441 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 H 0.070 0.930 4 C -0.040 4.040 5 C -0.526 4.526 6 H 0.049 0.951 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.171 1.171 13 N -0.309 5.309 14 C -0.024 4.024 15 C -0.141 4.141 16 C -0.164 4.164 17 C -0.199 4.199 18 C -0.209 4.209 19 H 0.082 0.918 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.069 0.931 25 H 0.157 0.843 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.578 0.418 11.179 15.396 hybrid contribution -0.483 -0.156 -0.612 0.795 sum -11.060 0.261 10.567 15.299 Atomic orbital electron populations 1.22421 0.95939 1.02266 1.02226 1.21350 0.92414 0.96646 0.90580 0.93044 1.19570 0.94362 0.96050 0.94007 1.21311 0.92198 1.32137 1.06969 0.95099 1.25998 0.95551 0.97692 1.00937 1.70096 1.08485 1.48087 1.33694 0.85693 0.79250 0.78560 0.79224 1.19551 1.21673 1.17149 1.60320 1.58057 1.09514 1.02989 1.21341 0.98039 0.94120 0.88921 1.21487 1.01734 1.01211 0.89657 1.21167 0.96536 0.96661 1.01989 1.23216 0.95029 1.00952 1.00669 1.23073 1.01452 0.97668 0.98676 0.91823 0.92096 0.92026 0.96365 0.96451 0.93140 0.84259 0.93461 0.94392 0.94400 0.91930 0.92077 0.88247 0.87967 0.88224 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.91 9.16 71.98 0.66 -4.25 16 2 C 0.10 3.85 2.53 44.91 0.11 3.96 16 3 H 0.05 2.13 7.80 -2.39 -0.02 2.11 16 4 C 0.00 -0.10 3.72 29.85 0.11 0.01 16 5 C -0.49 -28.76 9.39 25.60 0.24 -28.52 16 6 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 7 C -0.01 -0.45 5.47 84.66 0.46 0.01 16 8 N -0.96 -62.59 13.96 21.45 0.30 -62.29 16 9 Si 0.95 45.78 27.47 68.60 1.88 47.67 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 12 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 13 N -0.68 -24.94 4.49 -491.55 -2.21 -27.15 16 14 C 0.10 3.31 5.62 86.31 0.49 3.79 16 15 C -0.14 -3.88 2.50 -52.18 -0.13 -4.01 16 16 C -0.11 -3.31 9.73 71.98 0.70 -2.61 16 17 C -0.16 -3.39 9.82 30.61 0.30 -3.09 16 18 C -0.17 -3.82 9.97 30.61 0.31 -3.52 16 19 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 20 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 21 H 0.06 1.54 7.45 -2.39 -0.02 1.52 16 22 H 0.02 0.83 7.58 -2.38 -0.02 0.81 16 23 H 0.02 0.81 7.19 -2.39 -0.02 0.79 16 24 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 25 H 0.34 11.27 8.35 -89.69 -0.75 10.52 16 26 H 0.05 1.69 8.06 -2.39 -0.02 1.67 16 27 H 0.04 1.04 7.19 -2.39 -0.02 1.02 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.62 7.90 -2.38 -0.02 1.60 16 30 H 0.06 2.23 6.70 -2.39 -0.02 2.21 16 31 H 0.10 1.88 8.05 -2.39 -0.02 1.86 16 32 H 0.10 1.92 8.05 -2.39 -0.02 1.90 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -67.07 275.91 3.47 -63.60 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.24 Total: 16.39 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 3.25 Total: -38.23 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -1.91 Total: -89.43 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.67 kcal Total: -67.07 3.47 -63.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.637 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds