Wall clock time and date at job start Mon Mar 30 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.50696 * 109.47268 * 174.99506 * 4 2 1 6 6 H 1.08004 * 119.99945 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00438 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99387 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00351 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47234 * 90.00117 * 9 7 5 11 11 H 1.48497 * 109.47345 * 210.00260 * 9 7 5 12 12 H 1.48502 * 109.47091 * 330.00344 * 9 7 5 13 13 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 14 14 C 1.46903 * 110.99807 * 275.00039 * 13 2 1 15 15 H 1.09003 * 115.55063 * 350.58223 * 14 13 2 16 16 C 1.52997 * 117.49665 * 136.25365 * 14 13 2 17 17 C 1.52993 * 117.49734 * 204.91470 * 14 13 2 18 18 C 1.53003 * 117.50237 * 0.02562 * 17 14 13 19 19 C 1.53001 * 117.50237 * 145.02420 * 17 14 13 20 20 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 21 21 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 24 24 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 25 25 H 0.97002 * 119.99896 * 179.97438 * 8 7 5 26 26 H 1.00902 * 111.00121 * 38.95441 * 13 2 1 27 27 H 1.09004 * 117.49831 * 214.97731 * 16 14 13 28 28 H 1.08997 * 117.50216 * 0.02562 * 16 14 13 29 29 H 1.09000 * 109.47028 * 59.99849 * 18 17 14 30 30 H 1.08995 * 109.47788 * 180.02562 * 18 17 14 31 31 H 1.09005 * 109.46698 * 300.00514 * 18 17 14 32 32 H 1.09003 * 109.47082 * 59.99448 * 19 17 14 33 33 H 1.08999 * 109.47296 * 180.02562 * 19 17 14 34 34 H 1.09005 * 109.46419 * 299.99768 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0860 -0.5393 7 6 4.2305 -1.1932 -2.3579 8 7 3.5765 -1.8375 -3.2996 9 14 6.0922 -1.0619 -2.4363 10 1 6.7002 -2.2146 -1.7243 11 1 6.5297 -1.0700 -3.8554 12 1 6.5268 0.2033 -1.7915 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.9232 1.2761 2.1172 16 6 1.5653 -0.2936 3.6911 17 6 3.0689 -0.1151 3.4665 18 6 3.9150 -1.3797 3.3052 19 6 3.7558 1.0518 4.1787 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7517 -1.7714 -1.2056 24 1 1.6054 -0.2616 -2.1370 25 1 4.0608 -2.2442 -4.0351 26 1 1.4496 -1.4980 1.4100 27 1 1.0661 0.4206 4.3460 28 1 1.1788 -1.3122 3.7242 29 1 4.5205 -1.2990 2.4025 30 1 4.5667 -1.4939 4.1714 31 1 3.2599 -2.2475 3.2269 32 1 3.0024 1.6895 4.6412 33 1 4.4261 0.6652 4.9464 34 1 4.3288 1.6322 3.4555 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812602.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:38 Heat of formation + Delta-G solvation = 4.675928 kcal Electronic energy + Delta-G solvation = -12836.664796 eV Core-core repulsion = 10769.518164 eV Total energy + Delta-G solvation = -2067.146632 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.48666 -35.40266 -32.39153 -29.78251 -27.60371 -27.24217 -26.95683 -23.00818 -21.30747 -19.71590 -18.48104 -16.14038 -15.30080 -14.72759 -14.22355 -13.47545 -13.44552 -13.34877 -12.70562 -12.29726 -12.04781 -11.76009 -11.72758 -11.53745 -11.40572 -10.97310 -10.82441 -10.60390 -10.45089 -10.12235 -10.01103 -9.49304 -8.98505 -8.92043 -8.21405 -7.36254 -5.83775 -3.80903 3.42437 3.47975 3.52148 4.10333 4.60381 4.64248 5.13199 5.16565 5.37608 5.49946 5.55125 5.76878 5.83111 5.92578 5.93834 5.96415 6.07151 6.16001 6.21282 6.31015 6.38439 6.48593 6.54403 6.66140 6.84505 7.06640 7.62690 7.73422 8.07236 8.10681 8.21420 8.64893 9.24711 9.80154 11.28464 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.010742 C = 0.008578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.816287 B = 2605.876510 C = 3263.321210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.065 0.935 4 C 0.032 3.968 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.628 5.628 14 C 0.045 3.955 15 H 0.100 0.900 16 C -0.211 4.211 17 C -0.126 4.126 18 C -0.100 4.100 19 C -0.111 4.111 20 H 0.038 0.962 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.256 0.744 26 H 0.333 0.667 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 3.565 12.202 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 H 0.083 0.917 4 C -0.005 4.005 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.256 5.256 14 C -0.066 4.066 15 H 0.117 0.883 16 C -0.250 4.250 17 C -0.127 4.127 18 C -0.158 4.158 19 C -0.169 4.169 20 H 0.057 0.943 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.036 0.964 25 H 0.066 0.934 26 H 0.152 0.848 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.554 3.544 11.834 12.615 hybrid contribution 0.023 0.046 0.136 0.146 sum -2.531 3.590 11.971 12.751 Atomic orbital electron populations 1.22591 0.99438 1.01162 1.00621 1.21882 0.89909 0.98104 0.91995 0.91702 1.19118 0.96293 0.95361 0.89719 1.21157 0.91872 1.32679 1.06706 0.92308 1.25008 0.97947 0.96003 0.96072 1.69967 1.35118 1.37140 1.12417 0.86637 0.86557 0.78310 0.76693 1.20923 1.21675 1.20085 1.60198 1.56427 1.07583 1.01430 1.22615 1.01724 0.96433 0.85868 0.88266 1.23742 0.97037 1.01942 1.02250 1.21757 0.90455 0.98071 1.02467 1.21120 0.98838 0.94524 1.01270 1.21312 0.99765 0.96391 0.99398 0.94311 0.92566 0.93110 0.96553 0.96436 0.93403 0.84781 0.89733 0.89252 0.91010 0.93867 0.92939 0.93137 0.92616 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.16 37.16 0.34 -2.71 16 2 C 0.09 1.84 2.49 -67.71 -0.17 1.67 16 3 H 0.06 1.36 7.57 -51.93 -0.39 0.97 16 4 C 0.03 0.84 4.65 -27.89 -0.13 0.71 16 5 C -0.49 -13.84 8.84 -34.44 -0.30 -14.14 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.75 13.29 55.43 0.74 -27.01 16 9 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.63 -11.87 5.61 -99.74 -0.56 -12.43 16 14 C 0.05 0.73 5.79 -67.72 -0.39 0.34 16 15 H 0.10 1.59 7.60 -51.93 -0.39 1.19 16 16 C -0.21 -2.85 9.53 -26.69 -0.25 -3.11 16 17 C -0.13 -1.86 2.70 -154.47 -0.42 -2.28 16 18 C -0.10 -1.55 9.31 37.16 0.35 -1.20 16 19 C -0.11 -1.42 9.85 37.16 0.37 -1.05 16 20 H 0.04 0.58 8.07 -51.93 -0.42 0.16 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.33 5.95 8.26 -39.29 -0.32 5.62 16 27 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 28 H 0.09 1.19 8.00 -51.93 -0.42 0.77 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.04 0.58 7.92 -51.93 -0.41 0.17 16 31 H 0.05 0.80 7.90 -51.93 -0.41 0.39 16 32 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 33 H 0.05 0.64 7.92 -51.93 -0.41 0.23 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 281.62 15.07 4.24 4.24 Total: -1.00 -29.88 281.62 -7.40 -37.28 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.09 Total: 0.95 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -0.71 Total: -20.45 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.18 Total: -39.44 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.88 -7.40 -37.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812602.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.952 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds