Wall clock time and date at job start Mon Mar 30 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.50696 * 109.47268 * 174.99506 * 4 2 1 6 6 H 1.08004 * 119.99945 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00438 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99387 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00351 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47234 * 90.00117 * 9 7 5 11 11 H 1.48497 * 109.47345 * 210.00260 * 9 7 5 12 12 H 1.48502 * 109.47091 * 330.00344 * 9 7 5 13 13 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 14 14 C 1.46903 * 110.99807 * 275.00039 * 13 2 1 15 15 H 1.09003 * 115.55063 * 350.58223 * 14 13 2 16 16 C 1.52997 * 117.49665 * 136.25365 * 14 13 2 17 17 C 1.52993 * 117.49734 * 204.91470 * 14 13 2 18 18 C 1.53003 * 117.50237 * 0.02562 * 17 14 13 19 19 C 1.53001 * 117.50237 * 145.02420 * 17 14 13 20 20 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 21 21 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 24 24 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 25 25 H 0.97002 * 119.99896 * 179.97438 * 8 7 5 26 26 H 1.00902 * 111.00121 * 38.95441 * 13 2 1 27 27 H 1.09004 * 117.49831 * 214.97731 * 16 14 13 28 28 H 1.08997 * 117.50216 * 0.02562 * 16 14 13 29 29 H 1.09000 * 109.47028 * 59.99849 * 18 17 14 30 30 H 1.08995 * 109.47788 * 180.02562 * 18 17 14 31 31 H 1.09005 * 109.46698 * 300.00514 * 18 17 14 32 32 H 1.09003 * 109.47082 * 59.99448 * 19 17 14 33 33 H 1.08999 * 109.47296 * 180.02562 * 19 17 14 34 34 H 1.09005 * 109.46419 * 299.99768 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0860 -0.5393 7 6 4.2305 -1.1932 -2.3579 8 7 3.5765 -1.8375 -3.2996 9 14 6.0922 -1.0619 -2.4363 10 1 6.7002 -2.2146 -1.7243 11 1 6.5297 -1.0700 -3.8554 12 1 6.5268 0.2033 -1.7915 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.9232 1.2761 2.1172 16 6 1.5653 -0.2936 3.6911 17 6 3.0689 -0.1151 3.4665 18 6 3.9150 -1.3797 3.3052 19 6 3.7558 1.0518 4.1787 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7517 -1.7714 -1.2056 24 1 1.6054 -0.2616 -2.1370 25 1 4.0608 -2.2442 -4.0351 26 1 1.4496 -1.4980 1.4100 27 1 1.0661 0.4206 4.3460 28 1 1.1788 -1.3122 3.7242 29 1 4.5205 -1.2990 2.4025 30 1 4.5667 -1.4939 4.1714 31 1 3.2599 -2.2475 3.2269 32 1 3.0024 1.6895 4.6412 33 1 4.4261 0.6652 4.9464 34 1 4.3288 1.6322 3.4555 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812602.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:38 Heat of formation + Delta-G solvation = -13.509764 kcal Electronic energy + Delta-G solvation = -12837.453387 eV Core-core repulsion = 10769.518164 eV Total energy + Delta-G solvation = -2067.935223 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74592 -36.99743 -34.52015 -31.25406 -29.20539 -28.80016 -28.09277 -25.05079 -22.52284 -21.42520 -19.67887 -18.35368 -16.65654 -16.58494 -15.83974 -14.90285 -14.71791 -14.60238 -14.33550 -13.91634 -13.47149 -13.27931 -13.20436 -12.91783 -12.85206 -12.60752 -12.45856 -12.34304 -11.95134 -11.88529 -11.47581 -11.20429 -10.97960 -10.48841 -10.36814 -8.75661 -8.09183 -6.13564 1.40754 1.42189 1.52723 2.47577 2.92617 3.21795 3.35741 3.98181 4.04823 4.15439 4.31347 4.35754 4.47738 4.57816 4.75910 4.87868 4.92867 4.94766 5.04835 5.13379 5.17535 5.20735 5.23587 5.29102 5.41234 5.51591 5.61715 5.71032 5.90749 6.36684 6.54206 6.73097 7.00326 7.51762 9.02987 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.010742 C = 0.008578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.816287 B = 2605.876510 C = 3263.321210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 H 0.057 0.943 4 C 0.037 3.963 5 C -0.495 4.495 6 H 0.054 0.946 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.646 5.646 14 C 0.022 3.978 15 H 0.100 0.900 16 C -0.181 4.181 17 C -0.134 4.134 18 C -0.098 4.098 19 C -0.109 4.109 20 H 0.065 0.935 21 H 0.055 0.945 22 H 0.051 0.949 23 H -0.010 1.010 24 H -0.008 1.008 25 H 0.258 0.742 26 H 0.336 0.664 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 4.259 14.167 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.008 4.008 3 H 0.076 0.924 4 C 0.000 4.000 5 C -0.534 4.534 6 H 0.072 0.928 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.275 5.275 14 C -0.089 4.089 15 H 0.118 0.882 16 C -0.220 4.220 17 C -0.135 4.135 18 C -0.155 4.155 19 C -0.166 4.166 20 H 0.084 0.916 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.008 0.992 24 H 0.011 0.989 25 H 0.067 0.933 26 H 0.155 0.845 27 H 0.126 0.874 28 H 0.111 0.889 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.427 4.248 13.820 14.661 hybrid contribution -0.029 -0.184 -0.454 0.491 sum -2.456 4.064 13.367 14.185 Atomic orbital electron populations 1.22433 0.96588 1.01697 1.01907 1.21515 0.92117 0.96667 0.90492 0.92444 1.19001 0.95140 0.94160 0.91728 1.21460 0.93375 1.32154 1.06368 0.92777 1.25863 1.02881 0.95768 0.95810 1.70094 1.37020 1.38147 1.13096 0.85580 0.80715 0.78612 0.76889 1.20368 1.21100 1.19166 1.60030 1.56922 1.08408 1.02108 1.22621 1.04387 0.95966 0.85889 0.88211 1.23742 0.95873 1.02547 0.99843 1.21907 0.91371 0.98365 1.01896 1.21072 0.98870 0.95063 1.00530 1.21314 1.00261 0.95707 0.99297 0.91613 0.92603 0.92957 0.99169 0.98932 0.93308 0.84471 0.87366 0.88857 0.94352 0.91804 0.93263 0.91371 0.91303 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.50 9.16 71.98 0.66 -4.84 16 2 C 0.10 4.15 2.49 44.92 0.11 4.27 16 3 H 0.06 2.41 7.57 -2.39 -0.02 2.39 16 4 C 0.04 1.97 4.65 29.85 0.14 2.11 16 5 C -0.50 -28.79 8.84 25.60 0.23 -28.57 16 6 H 0.05 3.14 7.74 -2.91 -0.02 3.11 16 7 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 8 N -0.94 -58.88 13.29 21.45 0.28 -58.60 16 9 Si 0.96 46.48 29.54 68.60 2.03 48.50 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 13 N -0.65 -24.16 5.61 -469.47 -2.64 -26.80 16 14 C 0.02 0.68 5.79 44.91 0.26 0.94 16 15 H 0.10 3.02 7.60 -2.39 -0.02 3.00 16 16 C -0.18 -4.33 9.53 30.62 0.29 -4.03 16 17 C -0.13 -3.67 2.70 -52.16 -0.14 -3.81 16 18 C -0.10 -2.92 9.31 71.98 0.67 -2.25 16 19 C -0.11 -2.46 9.85 71.98 0.71 -1.75 16 20 H 0.06 1.81 8.07 -2.39 -0.02 1.80 16 21 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 23 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 24 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.34 11.84 8.26 -89.69 -0.74 11.10 16 27 H 0.11 2.12 8.05 -2.39 -0.02 2.10 16 28 H 0.09 2.19 8.00 -2.39 -0.02 2.17 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.59 7.92 -2.39 -0.02 1.57 16 31 H 0.05 1.45 7.90 -2.38 -0.02 1.43 16 32 H 0.07 1.30 7.90 -2.39 -0.02 1.28 16 33 H 0.07 1.37 7.92 -2.39 -0.02 1.35 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -64.51 281.62 3.37 -61.14 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.30 Total: 13.66 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 3.39 Total: -37.92 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -2.35 Total: -85.39 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -64.51 3.37 -61.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812602.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.635 kcal (2) G-P(sol) polarization free energy of solvation -64.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds