Wall clock time and date at job start Mon Mar 30 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46942 * 119.99666 * 9 7 5 12 12 H 1.48504 * 109.46979 * 239.99580 * 9 7 5 13 13 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 14 14 C 1.46900 * 110.99981 * 274.99476 * 13 2 1 15 15 H 1.08997 * 115.54889 * 9.42114 * 14 13 2 16 16 C 1.52995 * 117.49948 * 223.74646 * 14 13 2 17 17 C 1.53005 * 117.49725 * 155.09048 * 14 13 2 18 18 C 1.53001 * 117.49858 * 214.98413 * 17 14 13 19 19 C 1.53002 * 117.49800 * 0.02562 * 17 14 13 20 20 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 21 21 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 22 22 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 24 24 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 25 25 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 26 26 H 1.00907 * 110.99901 * 151.04662 * 13 2 1 27 27 H 1.09002 * 117.50068 * 0.02562 * 16 14 13 28 28 H 1.09003 * 117.49490 * 145.02288 * 16 14 13 29 29 H 1.08997 * 109.46999 * 59.99690 * 18 17 14 30 30 H 1.08993 * 109.46883 * 179.97438 * 18 17 14 31 31 H 1.08997 * 109.46522 * 299.99980 * 18 17 14 32 32 H 1.08998 * 109.47491 * 60.00052 * 19 17 14 33 33 H 1.08993 * 109.46809 * 180.02562 * 19 17 14 34 34 H 1.09005 * 109.46706 * 299.99723 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3584 8 7 3.5763 -1.8370 -3.3001 9 14 6.0920 -1.0615 -2.4367 10 1 6.5837 -0.2921 -1.2656 11 1 6.6853 -2.4227 -2.4197 12 1 6.4870 -0.3650 -3.6874 13 7 2.0196 -0.6926 1.1994 14 6 2.0825 0.2225 2.3469 15 1 1.6211 1.1983 2.1958 16 6 3.3280 0.1596 3.2332 17 6 1.9951 -0.3914 3.7456 18 6 1.2670 0.4117 4.8254 19 6 1.8495 -1.9115 3.8421 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.7515 -1.7715 -1.2057 24 1 1.6053 -0.2617 -2.1370 25 1 4.0605 -2.2431 -4.0360 26 1 2.9173 -1.1206 1.0287 27 1 4.1010 -0.5605 2.9646 28 1 3.6858 1.0941 3.6655 29 1 0.2344 0.5792 4.5193 30 1 1.2821 -0.1435 5.7632 31 1 1.7655 1.3712 4.9626 32 1 2.7084 -2.3894 3.3710 33 1 1.7992 -2.2057 4.8904 34 1 0.9366 -2.2219 3.3337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:47 Heat of formation + Delta-G solvation = -17.385712 kcal Electronic energy + Delta-G solvation = -12794.166552 eV Core-core repulsion = 10726.063255 eV Total energy + Delta-G solvation = -2068.103297 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74486 -37.03959 -34.52997 -31.27073 -29.33962 -28.87631 -28.10675 -25.14030 -22.46620 -21.17804 -19.65921 -18.51678 -16.81805 -16.60449 -15.90764 -15.38170 -14.67210 -14.49735 -14.32943 -13.62662 -13.47846 -13.21867 -13.19200 -12.86876 -12.67655 -12.65569 -12.62557 -12.33182 -12.26421 -11.93319 -11.48250 -11.13550 -11.02087 -10.59303 -10.40938 -8.92014 -8.20928 -6.31460 1.37701 1.38598 1.50697 2.38842 2.87263 3.11742 3.37470 3.96494 4.00433 4.16817 4.32612 4.36875 4.60054 4.66385 4.75444 4.88839 4.92191 4.94832 5.06988 5.13826 5.16133 5.20437 5.21565 5.33349 5.38174 5.48337 5.55284 5.63015 5.83089 6.19883 6.47016 6.62387 6.83993 7.37455 8.90994 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038420 B = 0.009217 C = 0.008087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.615447 B = 3037.216114 C = 3461.620077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.098 3.902 3 H 0.025 0.975 4 C 0.027 3.973 5 C -0.534 4.534 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.280 1.280 13 N -0.650 5.650 14 C 0.019 3.981 15 H 0.103 0.897 16 C -0.202 4.202 17 C -0.117 4.117 18 C -0.107 4.107 19 C -0.099 4.099 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.048 0.952 23 H -0.003 1.003 24 H -0.004 1.004 25 H 0.263 0.737 26 H 0.342 0.658 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 3.989 13.736 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.012 4.012 3 H 0.043 0.957 4 C -0.011 4.011 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.281 5.281 14 C -0.092 4.092 15 H 0.120 0.880 16 C -0.241 4.241 17 C -0.119 4.119 18 C -0.165 4.165 19 C -0.157 4.157 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.072 0.928 26 H 0.163 0.837 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.206 3.638 13.716 14.548 hybrid contribution 1.737 0.345 -0.943 2.006 sum -1.469 3.983 12.773 13.460 Atomic orbital electron populations 1.21700 0.94450 1.01358 1.00852 1.21454 0.95092 0.94790 0.89855 0.95661 1.19150 0.94894 0.94728 0.92310 1.21548 0.93270 1.34062 1.08278 0.92533 1.25895 1.03375 0.94797 0.95332 1.70100 1.37504 1.36750 1.12717 0.85464 0.79793 0.77953 0.78217 1.18769 1.20450 1.20566 1.60311 1.33090 1.30984 1.03724 1.22694 1.01560 0.96109 0.88832 0.87952 1.23748 0.91571 1.03168 1.05611 1.21924 0.98609 0.96245 0.95081 1.21322 0.99596 0.98982 0.96562 1.21113 1.01361 0.92071 1.01121 0.92102 0.92850 0.93334 0.98473 0.98561 0.92798 0.83731 0.89944 0.87814 0.92141 0.90972 0.91997 0.94030 0.91343 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.42 71.98 0.68 -3.85 16 2 C 0.10 4.13 2.49 44.92 0.11 4.24 16 3 H 0.03 1.09 7.73 -2.39 -0.02 1.07 16 4 C 0.03 1.41 4.57 29.85 0.14 1.54 16 5 C -0.53 -29.89 8.12 25.60 0.21 -29.68 16 6 H 0.06 3.06 7.49 -2.91 -0.02 3.04 16 7 C 0.00 0.24 5.46 84.65 0.46 0.70 16 8 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 9 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 N -0.65 -25.36 5.96 -469.48 -2.80 -28.15 16 14 C 0.02 0.61 5.72 44.92 0.26 0.87 16 15 H 0.10 3.17 7.77 -2.39 -0.02 3.15 16 16 C -0.20 -5.73 9.52 30.62 0.29 -5.44 16 17 C -0.12 -3.10 2.70 -52.16 -0.14 -3.24 16 18 C -0.11 -2.18 9.85 71.98 0.71 -1.47 16 19 C -0.10 -2.66 9.31 71.98 0.67 -1.99 16 20 H 0.06 1.90 8.07 -2.38 -0.02 1.88 16 21 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 24 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 26 H 0.34 14.79 6.99 -89.69 -0.63 14.16 16 27 H 0.08 2.52 8.00 -2.39 -0.02 2.50 16 28 H 0.10 2.55 8.05 -2.39 -0.02 2.53 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.24 7.92 -2.39 -0.02 1.22 16 31 H 0.06 1.14 7.90 -2.39 -0.02 1.12 16 32 H 0.04 1.21 7.90 -2.39 -0.02 1.19 16 33 H 0.07 1.48 7.92 -2.39 -0.02 1.47 16 34 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -61.09 280.17 3.31 -57.78 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.41 Total: 18.70 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.38 Total: -38.31 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.51 Total: -84.49 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -61.09 3.31 -57.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.397 kcal (2) G-P(sol) polarization free energy of solvation -61.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds