Wall clock time and date at job start Mon Mar 30 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99677 * 2 1 3 5 5 C 1.50702 * 109.47522 * 185.00185 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46895 * 109.47206 * 239.99530 * 2 1 3 14 14 C 1.46900 * 111.00012 * 84.99923 * 13 2 1 15 15 H 1.09001 * 109.47532 * 325.00301 * 14 13 2 16 16 C 1.53005 * 109.47203 * 85.00196 * 14 13 2 17 17 C 1.52998 * 109.47288 * 205.00112 * 14 13 2 18 18 C 1.53001 * 117.50104 * 248.74741 * 17 14 13 19 19 C 1.53000 * 117.50045 * 180.08963 * 17 14 13 20 20 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 21 21 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 22 22 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47527 * 64.99784 * 4 2 1 24 24 H 1.09001 * 109.47054 * 304.99874 * 4 2 1 25 25 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 26 26 H 1.00898 * 111.00336 * 321.05112 * 13 2 1 27 27 H 1.08999 * 109.47445 * 180.02562 * 16 14 13 28 28 H 1.08999 * 109.46869 * 300.00046 * 16 14 13 29 29 H 1.09001 * 109.46791 * 59.99651 * 16 14 13 30 30 H 1.08994 * 115.55281 * 34.42016 * 17 14 13 31 31 H 1.09010 * 117.50037 * 359.97438 * 18 17 14 32 32 H 1.08996 * 117.50137 * 145.01872 * 18 17 14 33 33 H 1.09004 * 117.50392 * 214.98202 * 19 17 14 34 34 H 1.09004 * 117.49749 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5415 -1.1053 2.4104 9 14 3.3015 -2.1085 3.6955 10 1 2.9467 -1.1648 4.7859 11 1 2.0620 -2.6945 3.1251 12 1 4.1574 -3.1935 4.2389 13 7 2.0197 -0.6926 -1.1993 14 6 2.0825 0.2224 -2.3469 15 1 1.2576 0.9328 -2.2908 16 6 3.4111 0.9807 -2.3224 17 6 1.9770 -0.5799 -3.6453 18 6 3.2213 -0.6551 -4.5324 19 6 2.0250 0.1976 -4.9621 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.7517 -1.7714 1.2058 24 1 1.6054 -0.2616 2.1370 25 1 6.0262 -1.5157 3.1436 26 1 1.4496 -1.4980 -1.4100 27 1 3.4576 1.6600 -3.1736 28 1 3.4862 1.5524 -1.3974 29 1 4.2359 0.2703 -2.3785 30 1 1.3349 -1.4597 -3.6035 31 1 4.1151 -0.1325 -4.1911 32 1 3.3977 -1.5842 -5.0744 33 1 1.4148 -0.1708 -5.7868 34 1 2.1313 1.2809 -4.9034 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812723.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:55 Heat of formation + Delta-G solvation = -5.490521 kcal Electronic energy + Delta-G solvation = -12870.209167 eV Core-core repulsion = 10802.621684 eV Total energy + Delta-G solvation = -2067.587483 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70867 -37.35589 -34.65743 -32.66715 -29.97168 -28.82984 -25.38634 -24.22964 -23.17865 -21.19088 -20.29078 -18.75556 -17.27678 -16.43261 -16.20603 -15.76409 -14.99310 -14.72843 -14.28135 -14.04853 -13.48142 -13.38012 -13.21659 -12.80767 -12.65419 -12.36650 -12.19057 -12.08390 -11.66959 -11.55957 -11.42539 -11.20221 -10.99523 -10.88480 -10.65112 -8.93631 -8.14905 -6.13194 1.37769 1.40268 1.51484 2.44379 2.89324 3.19130 3.49406 3.83832 4.04153 4.20141 4.22889 4.33786 4.45068 4.48064 4.56091 4.72709 4.79914 4.87101 4.98436 5.02054 5.14201 5.15853 5.24066 5.29410 5.32795 5.33826 5.49511 5.58011 5.79299 6.41278 6.57010 6.81911 6.95521 7.47101 9.02680 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.043448 B = 0.009163 C = 0.008176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.299042 B = 3055.073147 C = 3423.636359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 H 0.052 0.948 4 C -0.003 4.003 5 C -0.487 4.487 6 H 0.035 0.965 7 C -0.008 4.008 8 N -0.961 5.961 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.249 1.249 12 H -0.291 1.291 13 N -0.680 5.680 14 C 0.120 3.880 15 H 0.046 0.954 16 C -0.133 4.133 17 C -0.162 4.162 18 C -0.187 4.187 19 C -0.160 4.160 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.260 0.740 26 H 0.338 0.662 27 H 0.071 0.929 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 1.650 -11.483 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 H 0.070 0.930 4 C -0.041 4.041 5 C -0.526 4.526 6 H 0.053 0.947 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.173 1.173 12 H -0.217 1.217 13 N -0.312 5.312 14 C 0.011 3.989 15 H 0.064 0.936 16 C -0.191 4.191 17 C -0.181 4.181 18 C -0.224 4.224 19 C -0.197 4.197 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.157 0.843 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.465 1.685 -11.222 15.437 hybrid contribution -0.494 -0.326 0.722 0.934 sum -10.959 1.359 -10.500 15.238 Atomic orbital electron populations 1.22436 0.96032 1.02258 1.02221 1.21362 0.92289 0.96673 0.90538 0.92976 1.19576 0.94479 0.95982 0.94025 1.21347 0.92189 1.32195 1.06832 0.94663 1.25984 0.95553 0.97733 1.00929 1.70093 1.08443 1.48143 1.33725 0.85710 0.79246 0.78589 0.79292 1.19561 1.17250 1.21688 1.60372 1.58357 1.09404 1.03034 1.20930 0.96323 0.93202 0.88487 0.93636 1.21847 0.97766 0.99269 1.00231 1.22417 1.02825 1.01922 0.90913 1.23133 0.93161 1.02590 1.03498 1.23036 1.01238 0.98652 0.96819 0.91897 0.91948 0.92106 0.96573 0.96478 0.93176 0.84254 0.91022 0.95192 0.93734 0.87391 0.89120 0.88400 0.87175 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.99 9.15 71.98 0.66 -4.33 16 2 C 0.10 3.92 2.34 44.92 0.11 4.03 16 3 H 0.05 2.18 7.11 -2.39 -0.02 2.16 16 4 C 0.00 -0.13 3.72 29.85 0.11 -0.02 16 5 C -0.49 -28.79 9.39 25.60 0.24 -28.55 16 6 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 7 C -0.01 -0.47 5.47 84.65 0.46 -0.01 16 8 N -0.96 -62.74 13.96 21.45 0.30 -62.44 16 9 Si 0.95 46.03 27.47 68.60 1.88 47.92 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 12 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 13 N -0.68 -25.15 5.77 -469.47 -2.71 -27.86 16 14 C 0.12 3.71 2.82 44.92 0.13 3.84 16 15 H 0.05 1.33 7.11 -2.39 -0.02 1.31 16 16 C -0.13 -4.54 7.99 71.98 0.58 -3.97 16 17 C -0.16 -4.10 5.82 -10.79 -0.06 -4.16 16 18 C -0.19 -4.52 9.57 30.62 0.29 -4.23 16 19 C -0.16 -3.20 9.90 30.62 0.30 -2.90 16 20 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.06 1.58 7.43 -2.39 -0.02 1.56 16 22 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 23 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 24 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 25 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 26 H 0.34 11.23 7.91 -89.70 -0.71 10.52 16 27 H 0.07 1.97 7.07 -2.39 -0.02 1.95 16 28 H 0.03 1.16 7.43 -2.39 -0.02 1.14 16 29 H 0.04 1.70 6.97 -2.39 -0.02 1.68 16 30 H 0.11 2.55 7.85 -2.39 -0.02 2.53 16 31 H 0.09 2.43 5.85 -2.38 -0.01 2.42 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.10 1.86 7.60 -2.38 -0.02 1.84 16 Total: -1.00 -67.72 270.09 2.58 -65.14 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.29 Total: 17.54 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 2.81 Total: -40.29 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -2.41 Total: -90.30 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.88 Total: 47.92 kcal Total: -67.72 2.58 -65.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812723.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.648 kcal (2) G-P(sol) polarization free energy of solvation -67.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds