Wall clock time and date at job start Mon Mar 30 2020 01:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47385 * 2 1 4 4 C 1.53008 * 109.46706 * 240.00753 * 2 1 3 5 5 C 1.50703 * 109.46860 * 174.99962 * 4 2 1 6 6 H 1.08001 * 120.00183 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99799 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99951 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99976 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46904 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47492 * 120.00359 * 9 7 5 12 12 H 1.48502 * 109.46951 * 240.00262 * 9 7 5 13 13 N 1.46903 * 109.47307 * 120.00883 * 2 1 3 14 14 C 1.46895 * 110.99790 * 274.99755 * 13 2 1 15 15 C 1.52999 * 109.47056 * 179.97438 * 14 13 2 16 16 C 1.53786 * 113.61361 * 184.99739 * 15 14 13 17 17 C 1.53781 * 87.17350 * 220.06273 * 16 15 14 18 18 C 1.53782 * 87.08260 * 25.39213 * 17 16 15 19 19 H 1.08990 * 109.47068 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46811 * 299.99492 * 1 2 3 21 21 H 1.09000 * 109.47107 * 59.98867 * 1 2 3 22 22 H 1.09001 * 109.47016 * 294.99934 * 4 2 1 23 23 H 1.08994 * 109.47319 * 54.99642 * 4 2 1 24 24 H 0.97003 * 120.00037 * 180.02562 * 8 7 5 25 25 H 1.00904 * 110.99814 * 151.04260 * 13 2 1 26 26 H 1.09002 * 109.47616 * 59.99626 * 14 13 2 27 27 H 1.09004 * 109.47026 * 299.99702 * 14 13 2 28 28 H 1.08993 * 112.90825 * 316.24939 * 15 14 13 29 29 H 1.09002 * 113.61357 * 105.47190 * 16 15 14 30 30 H 1.09002 * 113.61608 * 334.65352 * 16 15 14 31 31 H 1.09001 * 113.61695 * 139.93969 * 17 16 15 32 32 H 1.08997 * 113.61223 * 270.84552 * 17 16 15 33 33 H 1.08997 * 113.61668 * 89.11298 * 18 17 16 34 34 H 1.08998 * 113.61674 * 219.93807 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 1 4.0790 -0.0862 -0.5393 7 6 4.2303 -1.1933 -2.3581 8 7 3.5762 -1.8374 -3.2998 9 14 6.0921 -1.0621 -2.4365 10 1 6.5837 -0.2918 -1.2660 11 1 6.6855 -2.4233 -2.4186 12 1 6.4870 -0.3664 -3.6876 13 7 2.0197 -0.6927 1.1993 14 6 2.0826 0.2222 2.3468 15 6 2.5952 -0.5337 3.5743 16 6 2.5837 0.3049 4.8634 17 6 3.9367 -0.3411 5.2052 18 6 4.1301 -0.5495 3.6939 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5140 -0.8899 22 1 1.7515 -1.7714 -1.2059 23 1 1.6053 -0.2616 -2.1370 24 1 4.0606 -2.2448 -4.0350 25 1 2.9174 -1.1207 1.0285 26 1 1.0872 0.6161 2.5526 27 1 2.7590 1.0459 2.1182 28 1 2.1382 -1.5165 3.6887 29 1 1.7841 0.0345 5.5530 30 1 2.6448 1.3787 4.6863 31 1 4.6530 0.3527 5.6454 32 1 3.8471 -1.2712 5.7663 33 1 4.6141 0.2904 3.1956 34 1 4.5801 -1.5091 3.4395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:22 Heat of formation + Delta-G solvation = -6.033336 kcal Electronic energy + Delta-G solvation = -12687.542474 eV Core-core repulsion = 10619.931453 eV Total energy + Delta-G solvation = -2067.611021 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.78178 -36.13609 -32.70248 -30.61616 -27.36053 -26.33688 -25.37795 -23.11370 -21.68168 -19.55826 -18.91954 -16.32700 -15.67804 -15.04245 -14.58037 -14.36605 -14.00644 -12.89944 -12.71359 -12.29727 -11.98029 -11.80404 -11.51449 -11.42863 -11.18416 -11.07344 -10.67691 -10.50000 -10.34724 -10.23062 -10.02800 -9.78629 -9.14993 -9.02946 -8.38365 -7.56763 -6.01365 -4.04161 3.29395 3.37253 3.40369 4.44246 4.68515 4.79913 4.91469 5.01983 5.24111 5.39516 5.69141 5.81160 5.87077 5.90276 5.92509 5.98865 6.10097 6.17986 6.24711 6.30898 6.39972 6.46366 6.58037 6.73809 6.97458 6.99903 7.58026 7.66980 7.99030 8.13035 8.35025 8.41814 9.02265 9.59875 11.09674 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030507 B = 0.009640 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.600401 B = 2903.869254 C = 3685.952325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.027 0.973 4 C 0.019 3.981 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.683 5.683 14 C 0.069 3.931 15 C -0.105 4.105 16 C -0.137 4.137 17 C -0.143 4.143 18 C -0.140 4.140 19 H 0.054 0.946 20 H 0.035 0.965 21 H 0.047 0.953 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.260 0.740 25 H 0.354 0.646 26 H 0.061 0.939 27 H 0.022 0.978 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 3.349 12.786 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.018 4.018 5 C -0.560 4.560 6 H 0.070 0.930 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.317 5.317 14 C -0.061 4.061 15 C -0.124 4.124 16 C -0.175 4.175 17 C -0.180 4.180 18 C -0.178 4.178 19 H 0.073 0.927 20 H 0.054 0.946 21 H 0.066 0.934 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.174 0.826 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.866 3.003 12.777 13.257 hybrid contribution 1.843 0.604 -0.419 1.984 sum -0.023 3.608 12.358 12.874 Atomic orbital electron populations 1.21788 0.96838 1.01258 0.99374 1.21606 0.93298 0.95816 0.91609 0.95500 1.19291 0.95413 0.96202 0.90880 1.21216 0.92261 1.34298 1.08216 0.92990 1.24993 0.98224 0.95232 0.95725 1.69974 1.35368 1.35723 1.11991 0.86585 0.86020 0.77779 0.77909 1.19838 1.20954 1.21070 1.60571 1.34614 1.32128 1.04381 1.21916 0.99268 0.93912 0.90991 1.22595 0.95793 0.99922 0.94070 1.22911 0.97357 0.99577 0.97606 1.22794 0.97600 1.00639 0.96963 1.23023 0.96775 1.02257 0.95734 0.92686 0.94560 0.93419 0.95609 0.96112 0.93024 0.82559 0.92098 0.96022 0.88670 0.91869 0.90473 0.91975 0.90487 0.90371 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.42 37.16 0.35 -2.16 16 2 C 0.09 1.85 2.59 -67.71 -0.18 1.68 16 3 H 0.03 0.60 7.80 -51.93 -0.41 0.19 16 4 C 0.02 0.51 4.57 -27.88 -0.13 0.38 16 5 C -0.52 -14.53 8.12 -34.44 -0.28 -14.81 16 6 H 0.05 1.42 7.49 -52.49 -0.39 1.02 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 N -0.68 -13.57 6.31 -106.72 -0.67 -14.24 16 14 C 0.07 1.14 5.32 -3.83 -0.02 1.12 16 15 C -0.11 -1.48 3.91 -89.71 -0.35 -1.83 16 16 C -0.14 -1.60 7.64 -25.92 -0.20 -1.80 16 17 C -0.14 -1.61 8.08 -25.92 -0.21 -1.82 16 18 C -0.14 -1.91 7.64 -25.82 -0.20 -2.11 16 19 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 20 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.35 7.62 7.21 -39.29 -0.28 7.34 16 26 H 0.06 0.97 7.44 -51.93 -0.39 0.58 16 27 H 0.02 0.37 7.76 -51.93 -0.40 -0.03 16 28 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.11 7.90 -51.93 -0.41 0.70 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 275.93 15.07 4.16 4.16 Total: -1.00 -28.84 275.93 -8.13 -36.97 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.03 Total: 2.31 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -1.31 Total: -19.75 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.06 Total: -40.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.84 -8.13 -36.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.937 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds