Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47385 * 2 1 4 4 C 1.53008 * 109.46706 * 240.00753 * 2 1 3 5 5 C 1.50703 * 109.46860 * 174.99962 * 4 2 1 6 6 H 1.08001 * 120.00183 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99799 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99951 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99976 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46904 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47492 * 120.00359 * 9 7 5 12 12 H 1.48502 * 109.46951 * 240.00262 * 9 7 5 13 13 N 1.46903 * 109.47307 * 120.00883 * 2 1 3 14 14 C 1.46895 * 110.99790 * 274.99755 * 13 2 1 15 15 C 1.52999 * 109.47056 * 179.97438 * 14 13 2 16 16 C 1.53786 * 113.61361 * 184.99739 * 15 14 13 17 17 C 1.53781 * 87.17350 * 220.06273 * 16 15 14 18 18 C 1.53782 * 87.08260 * 25.39213 * 17 16 15 19 19 H 1.08990 * 109.47068 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46811 * 299.99492 * 1 2 3 21 21 H 1.09000 * 109.47107 * 59.98867 * 1 2 3 22 22 H 1.09001 * 109.47016 * 294.99934 * 4 2 1 23 23 H 1.08994 * 109.47319 * 54.99642 * 4 2 1 24 24 H 0.97003 * 120.00037 * 180.02562 * 8 7 5 25 25 H 1.00904 * 110.99814 * 151.04260 * 13 2 1 26 26 H 1.09002 * 109.47616 * 59.99626 * 14 13 2 27 27 H 1.09004 * 109.47026 * 299.99702 * 14 13 2 28 28 H 1.08993 * 112.90825 * 316.24939 * 15 14 13 29 29 H 1.09002 * 113.61357 * 105.47190 * 16 15 14 30 30 H 1.09002 * 113.61608 * 334.65352 * 16 15 14 31 31 H 1.09001 * 113.61695 * 139.93969 * 17 16 15 32 32 H 1.08997 * 113.61223 * 270.84552 * 17 16 15 33 33 H 1.08997 * 113.61668 * 89.11298 * 18 17 16 34 34 H 1.08998 * 113.61674 * 219.93807 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 1 4.0790 -0.0862 -0.5393 7 6 4.2303 -1.1933 -2.3581 8 7 3.5762 -1.8374 -3.2998 9 14 6.0921 -1.0621 -2.4365 10 1 6.5837 -0.2918 -1.2660 11 1 6.6855 -2.4233 -2.4186 12 1 6.4870 -0.3664 -3.6876 13 7 2.0197 -0.6927 1.1993 14 6 2.0826 0.2222 2.3468 15 6 2.5952 -0.5337 3.5743 16 6 2.5837 0.3049 4.8634 17 6 3.9367 -0.3411 5.2052 18 6 4.1301 -0.5495 3.6939 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5140 -0.8899 22 1 1.7515 -1.7714 -1.2059 23 1 1.6053 -0.2616 -2.1370 24 1 4.0606 -2.2448 -4.0350 25 1 2.9174 -1.1207 1.0285 26 1 1.0872 0.6161 2.5526 27 1 2.7590 1.0459 2.1182 28 1 2.1382 -1.5165 3.6887 29 1 1.7841 0.0345 5.5530 30 1 2.6448 1.3787 4.6863 31 1 4.6530 0.3527 5.6454 32 1 3.8471 -1.2712 5.7663 33 1 4.6141 0.2904 3.1956 34 1 4.5801 -1.5091 3.4395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = -23.354557 kcal Electronic energy + Delta-G solvation = -12688.293578 eV Core-core repulsion = 10619.931453 eV Total energy + Delta-G solvation = -2068.362125 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.89688 -37.78160 -34.78377 -32.24017 -29.30709 -27.66734 -26.38594 -25.08290 -22.96611 -21.18823 -20.09738 -18.52614 -17.02434 -16.51374 -16.37970 -15.72582 -15.38640 -14.69151 -14.05646 -13.62593 -13.52736 -13.29688 -13.24319 -12.99577 -12.69716 -12.62710 -12.33148 -12.32391 -12.05771 -11.45822 -11.28996 -11.08204 -10.95652 -10.84314 -10.58984 -9.17528 -8.20905 -6.31528 1.37736 1.38396 1.50655 2.38850 3.10474 3.41421 3.76989 3.88459 3.99320 4.04909 4.30770 4.51267 4.56247 4.69686 4.76764 4.82436 4.89093 4.91968 4.99228 5.08386 5.11940 5.17458 5.21191 5.32723 5.41442 5.48771 5.54823 5.68121 5.82900 6.19928 6.44802 6.67277 6.83659 7.37252 8.91087 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030507 B = 0.009640 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.600401 B = 2903.869254 C = 3685.952325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.093 3.907 3 H 0.021 0.979 4 C 0.026 3.974 5 C -0.533 4.533 6 H 0.055 0.945 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.686 5.686 14 C 0.071 3.929 15 C -0.109 4.109 16 C -0.126 4.126 17 C -0.131 4.131 18 C -0.150 4.150 19 H 0.049 0.951 20 H 0.061 0.939 21 H 0.052 0.948 22 H -0.003 1.003 23 H -0.005 1.005 24 H 0.263 0.737 25 H 0.341 0.659 26 H 0.071 0.929 27 H 0.015 0.985 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 4.048 14.559 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.017 4.017 3 H 0.039 0.961 4 C -0.011 4.011 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.206 1.206 13 N -0.318 5.318 14 C -0.058 4.058 15 C -0.128 4.128 16 C -0.164 4.164 17 C -0.168 4.168 18 C -0.187 4.187 19 H 0.068 0.932 20 H 0.080 0.920 21 H 0.071 0.929 22 H 0.015 0.985 23 H 0.013 0.987 24 H 0.072 0.928 25 H 0.160 0.840 26 H 0.089 0.911 27 H 0.033 0.967 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.284 3.716 14.571 15.092 hybrid contribution 1.624 0.381 -0.984 1.936 sum 0.340 4.097 13.587 14.195 Atomic orbital electron populations 1.21702 0.94441 1.01429 1.00914 1.21446 0.95204 0.94665 0.90372 0.96098 1.19155 0.94924 0.94727 0.92307 1.21531 0.93253 1.34083 1.08270 0.92650 1.25904 1.03448 0.94785 0.95307 1.70102 1.37513 1.36709 1.12746 0.85457 0.79709 0.78014 0.78214 1.18757 1.20345 1.20559 1.60634 1.33765 1.32819 1.04557 1.22007 0.99852 0.93413 0.90576 1.22602 0.95974 0.99999 0.94208 1.22877 0.98099 0.99420 0.96037 1.22764 0.97529 1.01429 0.95124 1.23062 0.96272 1.01471 0.97907 0.93189 0.92000 0.92892 0.98451 0.98664 0.92780 0.83987 0.91070 0.96710 0.89128 0.90324 0.90019 0.90701 0.89365 0.91325 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.42 71.98 0.68 -3.93 16 2 C 0.09 4.00 2.59 44.92 0.12 4.11 16 3 H 0.02 0.92 7.80 -2.39 -0.02 0.91 16 4 C 0.03 1.41 4.57 29.85 0.14 1.54 16 5 C -0.53 -30.15 8.12 25.60 0.21 -29.94 16 6 H 0.06 3.03 7.49 -2.91 -0.02 3.01 16 7 C 0.00 0.21 5.46 84.65 0.46 0.67 16 8 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 9 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.69 -27.05 6.31 -491.56 -3.10 -30.15 16 14 C 0.07 2.25 5.32 86.30 0.46 2.71 16 15 C -0.11 -2.90 3.91 -10.20 -0.04 -2.94 16 16 C -0.13 -2.59 7.64 31.12 0.24 -2.35 16 17 C -0.13 -2.61 8.08 31.12 0.25 -2.35 16 18 C -0.15 -3.88 7.64 31.18 0.24 -3.64 16 19 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 20 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 21 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 23 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 24 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 25 H 0.34 14.85 7.21 -89.69 -0.65 14.21 16 26 H 0.07 2.11 7.44 -2.39 -0.02 2.09 16 27 H 0.01 0.49 7.76 -2.38 -0.02 0.47 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.89 7.90 -2.39 -0.02 1.88 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -61.63 275.93 2.35 -59.28 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.40 Total: 17.12 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 2.75 Total: -36.13 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -2.82 Total: -86.74 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -61.63 2.35 -59.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.924 kcal (2) G-P(sol) polarization free energy of solvation -61.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds