Wall clock time and date at job start Mon Mar 30 2020 01:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47434 * 2 1 4 4 C 1.53001 * 109.46785 * 119.99776 * 2 1 3 5 5 C 1.50698 * 109.47034 * 184.99810 * 4 2 1 6 6 H 1.08001 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00201 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00008 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00236 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47235 * 90.00149 * 9 7 5 11 11 H 1.48504 * 109.47153 * 210.00386 * 9 7 5 12 12 H 1.48511 * 109.47055 * 330.00187 * 9 7 5 13 13 N 1.46903 * 109.47097 * 239.99567 * 2 1 3 14 14 C 1.46895 * 110.99790 * 85.00342 * 13 2 1 15 15 C 1.52999 * 109.47056 * 179.97438 * 14 13 2 16 16 C 1.53786 * 113.61361 * 184.99739 * 15 14 13 17 17 C 1.53781 * 87.17350 * 220.06273 * 16 15 14 18 18 C 1.53782 * 87.08260 * 25.39213 * 17 16 15 19 19 H 1.09003 * 109.47167 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46607 * 300.00063 * 1 2 3 21 21 H 1.08993 * 109.46717 * 60.00202 * 1 2 3 22 22 H 1.08994 * 109.47489 * 305.00108 * 4 2 1 23 23 H 1.08999 * 109.47576 * 65.00282 * 4 2 1 24 24 H 0.96995 * 119.99775 * 179.97438 * 8 7 5 25 25 H 1.00897 * 110.99907 * 208.95524 * 13 2 1 26 26 H 1.09002 * 109.47616 * 59.99626 * 14 13 2 27 27 H 1.09004 * 109.47026 * 299.99702 * 14 13 2 28 28 H 1.08993 * 112.90825 * 316.24939 * 15 14 13 29 29 H 1.09002 * 113.61357 * 105.47190 * 16 15 14 30 30 H 1.09002 * 113.61608 * 334.65352 * 16 15 14 31 31 H 1.09001 * 113.61695 * 139.93969 * 17 16 15 32 32 H 1.08997 * 113.61223 * 270.84552 * 17 16 15 33 33 H 1.08997 * 113.61668 * 89.11298 * 18 17 16 34 34 H 1.08998 * 113.61674 * 219.93807 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0789 -0.0856 0.5397 7 6 4.2303 -1.1926 2.3585 8 7 3.5763 -1.8369 3.3002 9 14 6.0919 -1.0603 2.4376 10 1 6.4697 0.1624 3.1908 11 1 6.6444 -2.2554 3.1245 12 1 6.6416 -0.9828 1.0601 13 7 2.0197 -0.6926 -1.1994 14 6 2.0826 0.2224 -2.3468 15 6 2.5963 -0.5331 -3.5741 16 6 2.8155 0.3649 -4.8031 17 6 2.2311 -0.7792 -5.6484 18 6 1.4852 -1.2292 -4.3811 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3632 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 1.6054 -0.2617 2.1370 23 1 1.7517 -1.7715 1.2057 24 1 4.0606 -2.2436 4.0356 25 1 2.9173 -1.1206 -1.0287 26 1 2.7589 1.0461 -2.1182 27 1 1.0871 0.6161 -2.5525 28 1 3.4439 -1.1805 -3.3496 29 1 3.8654 0.5701 -5.0123 30 1 2.2005 1.2648 -4.8017 31 1 1.5707 -0.4394 -6.4462 32 1 2.9788 -1.4940 -5.9920 33 1 0.5059 -0.7656 -4.2630 34 1 1.4600 -2.3110 -4.2503 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814180.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:24 Heat of formation + Delta-G solvation = -5.661101 kcal Electronic energy + Delta-G solvation = -12630.966128 eV Core-core repulsion = 10563.371249 eV Total energy + Delta-G solvation = -2067.594879 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.76229 -36.15270 -32.70487 -30.63407 -27.35832 -26.30331 -25.39499 -23.11043 -21.67341 -19.63612 -18.89880 -16.33151 -15.52296 -15.22487 -14.45093 -14.27899 -14.11872 -13.04335 -12.73658 -12.29532 -11.93218 -11.78765 -11.46129 -11.31604 -11.17978 -11.12379 -10.68882 -10.51948 -10.35524 -10.23761 -9.94626 -9.92798 -9.14258 -9.03791 -8.38045 -7.54434 -6.01259 -4.04207 3.30342 3.37033 3.39481 4.44222 4.67140 4.81040 4.90719 5.00515 5.29523 5.42264 5.70607 5.70857 5.87158 5.90152 5.95761 5.99816 6.06592 6.19687 6.24147 6.30186 6.34498 6.49968 6.57990 6.73009 6.97404 6.99788 7.57931 7.66658 7.99074 8.13126 8.34542 8.41465 9.02065 9.59770 11.09719 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036273 B = 0.008405 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.739609 B = 3330.516976 C = 3876.538832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.523 4.523 6 H 0.051 0.949 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.069 3.931 15 C -0.105 4.105 16 C -0.138 4.138 17 C -0.145 4.145 18 C -0.125 4.125 19 H 0.054 0.946 20 H 0.047 0.953 21 H 0.035 0.965 22 H 0.020 0.980 23 H 0.026 0.974 24 H 0.261 0.739 25 H 0.353 0.647 26 H 0.021 0.979 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 2.988 -13.115 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.561 4.561 6 H 0.069 0.931 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.316 5.316 14 C -0.060 4.060 15 C -0.124 4.124 16 C -0.176 4.176 17 C -0.183 4.183 18 C -0.163 4.163 19 H 0.073 0.927 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.173 0.827 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.277 2.634 -13.105 13.763 hybrid contribution 1.857 0.622 0.419 2.003 sum -1.420 3.257 -12.686 13.174 Atomic orbital electron populations 1.21786 0.96856 1.01245 0.99331 1.21605 0.93292 0.95797 0.91608 0.95510 1.19281 0.95373 0.96205 0.90874 1.21182 0.92284 1.34393 1.08264 0.93052 1.24994 0.98232 0.95207 0.95723 1.69964 1.35487 1.35651 1.11941 0.86634 0.85933 0.77518 0.78134 1.20766 1.21184 1.19930 1.60552 1.34605 1.32146 1.04281 1.21925 0.99150 0.93921 0.91045 1.22555 0.98840 0.97673 0.93329 1.22933 1.00745 0.97355 0.96612 1.22836 0.99965 0.98585 0.96905 1.22870 0.97823 1.00640 0.94934 0.92687 0.93442 0.94606 0.96136 0.95599 0.92965 0.82651 0.96101 0.92022 0.89341 0.91930 0.90418 0.92009 0.90567 0.90440 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.42 37.16 0.35 -2.15 16 2 C 0.09 1.85 2.59 -67.71 -0.18 1.68 16 3 H 0.03 0.59 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.52 4.57 -27.88 -0.13 0.39 16 5 C -0.52 -14.57 8.12 -34.44 -0.28 -14.85 16 6 H 0.05 1.39 7.49 -52.49 -0.39 1.00 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.49 6.31 -106.72 -0.67 -14.16 16 14 C 0.07 1.15 5.32 -3.83 -0.02 1.12 16 15 C -0.11 -1.49 3.91 -89.71 -0.35 -1.84 16 16 C -0.14 -1.64 7.64 -25.92 -0.20 -1.83 16 17 C -0.15 -1.59 8.08 -25.92 -0.21 -1.80 16 18 C -0.13 -1.60 7.64 -25.82 -0.20 -1.80 16 19 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 20 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.03 0.59 7.45 -51.93 -0.39 0.20 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.35 7.57 7.20 -39.29 -0.28 7.29 16 26 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 27 H 0.06 0.98 7.14 -51.93 -0.37 0.61 16 28 H 0.09 1.32 8.13 -51.93 -0.42 0.89 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 275.92 15.07 4.16 4.16 Total: -1.00 -28.80 275.92 -8.13 -36.93 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.03 Total: 1.97 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -1.31 Total: -19.46 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.06 Total: -40.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.80 -8.13 -36.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814180.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.270 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds