Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46777 * 2 1 4 4 C 1.53003 * 109.46729 * 240.00652 * 2 1 3 5 5 C 1.50700 * 109.46854 * 174.99751 * 4 2 1 6 6 H 1.08003 * 120.00316 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99844 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99980 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99935 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47001 * 90.00647 * 9 7 5 11 11 H 1.48502 * 109.47271 * 210.00467 * 9 7 5 12 12 H 1.48497 * 109.47271 * 330.00398 * 9 7 5 13 13 N 1.46893 * 109.47476 * 120.00478 * 2 1 3 14 14 C 1.47486 * 110.99866 * 294.99830 * 13 2 1 15 15 C 1.53506 * 87.93221 * 221.29388 * 14 13 2 16 16 C 1.53003 * 114.17233 * 139.67021 * 15 14 13 17 17 C 1.52998 * 114.17277 * 272.37963 * 15 14 13 18 18 C 1.47474 * 111.00100 * 199.02992 * 13 2 1 19 19 H 1.09005 * 109.47512 * 59.99013 * 1 2 3 20 20 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47020 * 299.99955 * 1 2 3 22 22 H 1.09003 * 109.46674 * 294.99553 * 4 2 1 23 23 H 1.08999 * 109.47577 * 54.99904 * 4 2 1 24 24 H 0.97007 * 120.00242 * 179.97438 * 8 7 5 25 25 H 1.09000 * 113.47378 * 336.06597 * 14 13 2 26 26 H 1.08999 * 113.47621 * 106.52788 * 14 13 2 27 27 H 1.09001 * 109.46438 * 59.99826 * 16 15 14 28 28 H 1.08997 * 109.47444 * 180.02562 * 16 15 14 29 29 H 1.08999 * 109.46822 * 300.00719 * 16 15 14 30 30 H 1.08996 * 109.47632 * 59.99741 * 17 15 14 31 31 H 1.09006 * 109.47219 * 180.02562 * 17 15 14 32 32 H 1.09001 * 109.47348 * 299.99660 * 17 15 14 33 33 H 1.09008 * 113.47506 * 253.46575 * 18 13 2 34 34 H 1.08998 * 113.48033 * 23.93349 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6148 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2302 -1.1933 -2.3581 8 7 3.5762 -1.8375 -3.2998 9 14 6.0920 -1.0620 -2.4364 10 1 6.6999 -2.2148 -1.7246 11 1 6.5295 -1.0700 -3.8555 12 1 6.5267 0.2030 -1.7916 13 7 2.0197 -0.6925 1.1993 14 6 1.6473 0.0420 2.4228 15 6 3.0496 -0.2646 2.9669 16 6 3.6975 0.8989 3.7202 17 6 3.1572 -1.6006 3.7046 18 6 3.4230 -0.3360 1.4795 19 1 -0.3634 0.5140 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.7515 -1.7714 -1.2057 23 1 1.6053 -0.2616 -2.1371 24 1 4.0605 -2.2442 -4.0353 25 1 1.4694 1.1041 2.2544 26 1 0.8479 -0.4354 2.9895 27 1 3.0756 1.1706 4.5732 28 1 4.6853 0.5998 4.0708 29 1 3.7932 1.7554 3.0529 30 1 2.8924 -2.4122 3.0270 31 1 4.1793 -1.7398 4.0570 32 1 2.4765 -1.6015 4.5559 33 1 4.1285 -1.1337 1.2468 34 1 3.7190 0.6253 1.0595 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695838566.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = 19.382748 kcal Electronic energy + Delta-G solvation = -13223.896897 eV Core-core repulsion = 11157.388001 eV Total energy + Delta-G solvation = -2066.508897 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.03532 -34.60199 -32.35291 -30.09134 -27.74717 -27.14827 -24.92362 -24.05942 -22.50155 -19.24852 -18.05384 -16.08521 -15.22138 -14.84461 -14.45435 -14.16280 -13.48698 -12.76039 -12.70292 -12.29790 -11.96017 -11.83065 -11.58592 -11.41366 -11.20075 -10.93922 -10.88131 -10.71038 -10.41445 -10.22711 -9.92072 -9.62493 -9.01638 -8.75155 -8.29828 -7.99002 -5.93259 -3.93452 3.34250 3.40691 3.42462 4.50256 4.67756 4.79246 5.19298 5.43170 5.54605 5.59105 5.81316 5.84456 5.90730 5.93499 6.02474 6.11529 6.15571 6.20181 6.28836 6.34965 6.48464 6.51769 6.69374 6.72936 6.85317 6.93875 7.31216 7.64131 7.74392 8.06434 8.14558 8.48776 9.10762 9.68722 11.18557 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032384 B = 0.012196 C = 0.009706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.418436 B = 2295.280504 C = 2884.265302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.050 3.950 3 H 0.032 0.968 4 C 0.032 3.968 5 C -0.518 4.518 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.451 5.451 14 C 0.002 3.998 15 C -0.112 4.112 16 C -0.132 4.132 17 C -0.116 4.116 18 C 0.036 3.964 19 H 0.052 0.948 20 H 0.056 0.944 21 H 0.038 0.962 22 H 0.025 0.975 23 H 0.017 0.983 24 H 0.258 0.742 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 3.937 11.618 12.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 H 0.050 0.950 4 C -0.005 4.005 5 C -0.556 4.556 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.173 5.173 14 C -0.127 4.127 15 C -0.112 4.112 16 C -0.190 4.190 17 C -0.173 4.173 18 C -0.093 4.093 19 H 0.071 0.929 20 H 0.075 0.925 21 H 0.057 0.943 22 H 0.043 0.957 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.854 3.145 11.296 11.872 hybrid contribution 1.203 0.947 -0.271 1.555 sum -0.651 4.092 11.025 11.778 Atomic orbital electron populations 1.21814 0.96408 1.01590 0.99981 1.22344 0.93514 0.95922 0.94050 0.94971 1.19087 0.95690 0.95993 0.89702 1.21478 0.92292 1.33884 1.07920 0.91867 1.24987 0.97942 0.95583 0.95850 1.69970 1.35255 1.36261 1.12135 0.86697 0.86442 0.78375 0.77119 1.20685 1.21375 1.20002 1.68891 1.04891 1.43189 1.00340 1.23855 0.96717 0.97411 0.94767 1.22195 0.96849 0.95978 0.96190 1.21689 1.00137 0.97413 0.99763 1.21415 1.00643 0.95882 0.99352 1.23820 0.93536 1.00956 0.90993 0.92876 0.92466 0.94337 0.95701 0.96470 0.93190 0.92516 0.91044 0.92962 0.92686 0.92814 0.91293 0.93055 0.93251 0.89704 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.18 37.16 0.34 -2.23 16 2 C 0.05 1.08 1.94 -67.72 -0.13 0.95 16 3 H 0.03 0.70 7.56 -51.93 -0.39 0.31 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.52 -14.47 8.07 -34.44 -0.28 -14.74 16 6 H 0.06 1.68 4.56 -52.48 -0.24 1.44 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.45 -9.04 5.93 -236.57 -1.40 -10.45 16 14 C 0.00 0.03 5.73 -7.55 -0.04 -0.01 16 15 C -0.11 -1.71 1.53 -153.98 -0.24 -1.94 16 16 C -0.13 -1.70 9.30 37.16 0.35 -1.35 16 17 C -0.12 -1.63 9.22 37.16 0.34 -1.29 16 18 C 0.04 0.69 4.34 -7.55 -0.03 0.66 16 19 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 20 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 21 H 0.04 0.61 7.34 -51.93 -0.38 0.23 16 22 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.06 0.89 7.80 -51.93 -0.40 0.49 16 26 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 30 H 0.07 1.09 7.92 -51.93 -0.41 0.68 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.79 7.76 -51.92 -0.40 1.39 16 34 H 0.07 1.33 6.37 -51.93 -0.33 0.99 16 LS Contribution 268.25 15.07 4.04 4.04 Total: -1.00 -29.76 268.25 -7.47 -37.24 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -5.91 Total: -3.37 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 0.08 Total: -17.69 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.67 Total: -37.02 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.76 -7.47 -37.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838566.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.621 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds