Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46777 * 2 1 4 4 C 1.53003 * 109.46729 * 240.00652 * 2 1 3 5 5 C 1.50700 * 109.46854 * 174.99751 * 4 2 1 6 6 H 1.08003 * 120.00316 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99844 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99980 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99935 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47001 * 90.00647 * 9 7 5 11 11 H 1.48502 * 109.47271 * 210.00467 * 9 7 5 12 12 H 1.48497 * 109.47271 * 330.00398 * 9 7 5 13 13 N 1.46893 * 109.47476 * 120.00478 * 2 1 3 14 14 C 1.47486 * 110.99866 * 294.99830 * 13 2 1 15 15 C 1.53506 * 87.93221 * 221.29388 * 14 13 2 16 16 C 1.53003 * 114.17233 * 139.67021 * 15 14 13 17 17 C 1.52998 * 114.17277 * 272.37963 * 15 14 13 18 18 C 1.47474 * 111.00100 * 199.02992 * 13 2 1 19 19 H 1.09005 * 109.47512 * 59.99013 * 1 2 3 20 20 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47020 * 299.99955 * 1 2 3 22 22 H 1.09003 * 109.46674 * 294.99553 * 4 2 1 23 23 H 1.08999 * 109.47577 * 54.99904 * 4 2 1 24 24 H 0.97007 * 120.00242 * 179.97438 * 8 7 5 25 25 H 1.09000 * 113.47378 * 336.06597 * 14 13 2 26 26 H 1.08999 * 113.47621 * 106.52788 * 14 13 2 27 27 H 1.09001 * 109.46438 * 59.99826 * 16 15 14 28 28 H 1.08997 * 109.47444 * 180.02562 * 16 15 14 29 29 H 1.08999 * 109.46822 * 300.00719 * 16 15 14 30 30 H 1.08996 * 109.47632 * 59.99741 * 17 15 14 31 31 H 1.09006 * 109.47219 * 180.02562 * 17 15 14 32 32 H 1.09001 * 109.47348 * 299.99660 * 17 15 14 33 33 H 1.09008 * 113.47506 * 253.46575 * 18 13 2 34 34 H 1.08998 * 113.48033 * 23.93349 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6148 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2302 -1.1933 -2.3581 8 7 3.5762 -1.8375 -3.2998 9 14 6.0920 -1.0620 -2.4364 10 1 6.6999 -2.2148 -1.7246 11 1 6.5295 -1.0700 -3.8555 12 1 6.5267 0.2030 -1.7916 13 7 2.0197 -0.6925 1.1993 14 6 1.6473 0.0420 2.4228 15 6 3.0496 -0.2646 2.9669 16 6 3.6975 0.8989 3.7202 17 6 3.1572 -1.6006 3.7046 18 6 3.4230 -0.3360 1.4795 19 1 -0.3634 0.5140 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.7515 -1.7714 -1.2057 23 1 1.6053 -0.2616 -2.1371 24 1 4.0605 -2.2442 -4.0353 25 1 1.4694 1.1041 2.2544 26 1 0.8479 -0.4354 2.9895 27 1 3.0756 1.1706 4.5732 28 1 4.6853 0.5998 4.0708 29 1 3.7932 1.7554 3.0529 30 1 2.8924 -2.4122 3.0270 31 1 4.1793 -1.7398 4.0570 32 1 2.4765 -1.6015 4.5559 33 1 4.1285 -1.1337 1.2468 34 1 3.7190 0.6253 1.0595 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695838566.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -0.582424 kcal Electronic energy + Delta-G solvation = -13224.762652 eV Core-core repulsion = 11157.388001 eV Total energy + Delta-G solvation = -2067.374651 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.47586 -36.32132 -34.37337 -31.54736 -29.66742 -28.21232 -26.44858 -25.65876 -24.39545 -20.95394 -19.49308 -18.11128 -16.82000 -16.63418 -15.96270 -15.69186 -14.95248 -14.32171 -14.12447 -13.81790 -13.48539 -13.27999 -13.19259 -12.96824 -12.78316 -12.63688 -12.50013 -12.31523 -12.10362 -11.85275 -11.54982 -11.04060 -10.93418 -10.60665 -10.50287 -9.54165 -8.15796 -6.23219 1.37527 1.38962 1.48761 2.41437 3.15745 3.31844 3.46669 3.94873 4.21593 4.26303 4.35108 4.43052 4.62267 4.64023 4.75988 4.85813 4.89076 4.93691 5.03097 5.09975 5.15394 5.21456 5.22685 5.28534 5.32515 5.55163 5.56994 5.64694 5.69674 5.88402 6.28221 6.47029 6.90446 7.43674 8.96973 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032384 B = 0.012196 C = 0.009706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.418436 B = 2295.280504 C = 2884.265302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 H 0.030 0.970 4 C 0.038 3.962 5 C -0.527 4.527 6 H 0.075 0.925 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.261 1.261 13 N -0.475 5.475 14 C 0.008 3.992 15 C -0.094 4.094 16 C -0.128 4.128 17 C -0.114 4.114 18 C 0.026 3.974 19 H 0.056 0.944 20 H 0.048 0.952 21 H 0.069 0.931 22 H -0.012 1.012 23 H -0.010 1.010 24 H 0.260 0.740 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 5.027 13.918 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.051 4.051 3 H 0.048 0.952 4 C 0.001 3.999 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.185 1.185 13 N -0.197 5.197 14 C -0.121 4.121 15 C -0.094 4.094 16 C -0.186 4.186 17 C -0.171 4.171 18 C -0.103 4.103 19 H 0.075 0.925 20 H 0.068 0.932 21 H 0.088 0.912 22 H 0.007 0.993 23 H 0.008 0.992 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.328 4.246 13.617 14.325 hybrid contribution 1.001 0.583 -0.981 1.518 sum -0.327 4.829 12.636 13.531 Atomic orbital electron populations 1.21735 0.93950 1.01634 1.01687 1.22124 0.95509 0.94820 0.92650 0.95245 1.18946 0.95387 0.94112 0.91479 1.21909 0.93267 1.33368 1.07964 0.90745 1.25925 1.03224 0.95289 0.95534 1.70121 1.37350 1.37514 1.12953 0.85580 0.80144 0.78965 0.77224 1.20059 1.21084 1.18501 1.68837 1.05572 1.44234 1.01105 1.23913 0.97893 0.97690 0.92621 1.22158 0.95719 0.97733 0.93816 1.21665 1.00921 0.95910 1.00063 1.21414 1.02129 0.94182 0.99406 1.23788 0.92690 0.99183 0.94674 0.92537 0.93239 0.91236 0.99344 0.99172 0.93171 0.91478 0.89415 0.90594 0.91669 0.93200 0.93807 0.91772 0.90807 0.92571 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.18 71.98 0.66 -4.07 16 2 C 0.06 2.49 1.94 44.92 0.09 2.58 16 3 H 0.03 1.28 7.56 -2.39 -0.02 1.26 16 4 C 0.04 2.09 4.65 29.85 0.14 2.23 16 5 C -0.53 -30.19 8.07 25.60 0.21 -29.98 16 6 H 0.07 4.02 4.56 -2.91 -0.01 4.00 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 9 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.47 -18.83 5.93 -902.37 -5.35 -24.19 16 14 C 0.01 0.22 5.73 83.57 0.48 0.70 16 15 C -0.09 -2.63 1.53 -51.84 -0.08 -2.71 16 16 C -0.13 -2.82 9.30 71.98 0.67 -2.15 16 17 C -0.11 -2.92 9.22 71.98 0.66 -2.26 16 18 C 0.03 0.98 4.34 83.57 0.36 1.35 16 19 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 20 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.07 2.04 7.34 -2.39 -0.02 2.02 16 22 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 23 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 24 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 25 H 0.07 1.88 7.80 -2.39 -0.02 1.86 16 26 H 0.09 2.35 8.12 -2.39 -0.02 2.33 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.14 7.90 -2.39 -0.02 1.13 16 30 H 0.04 1.34 7.92 -2.39 -0.02 1.32 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 2.42 7.76 -2.38 -0.02 2.40 16 34 H 0.06 2.20 6.37 -2.39 -0.02 2.18 16 Total: -1.00 -65.62 268.25 1.65 -63.97 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.04 Total: 5.55 kcal Atomic # 6 Polarization: -37.69 SS G_CDS: 3.65 Total: -34.04 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -5.07 Total: -82.81 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -65.62 1.65 -63.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838566.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.390 kcal (2) G-P(sol) polarization free energy of solvation -65.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds