Wall clock time and date at job start Mon Mar 30 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46886 * 2 1 4 4 C 1.52994 * 109.46986 * 239.99461 * 2 1 3 5 5 C 1.50707 * 109.47286 * 65.14229 * 4 2 1 6 6 H 1.07998 * 119.99312 * 356.00735 * 5 4 2 7 7 C 1.37874 * 120.00138 * 176.27925 * 5 4 2 8 8 N 1.31508 * 120.00074 * 359.72716 * 7 5 4 9 9 Si 1.86798 * 119.99689 * 179.72210 * 7 5 4 10 10 H 1.48500 * 109.47022 * 60.00619 * 9 7 5 11 11 H 1.48501 * 109.47288 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47572 * 300.00354 * 9 7 5 13 13 N 1.46897 * 109.46682 * 119.99849 * 2 1 3 14 14 C 1.46900 * 110.99619 * 172.35333 * 13 2 1 15 15 C 1.46900 * 111.00312 * 296.30224 * 13 2 1 16 16 C 1.53783 * 113.61651 * 271.72379 * 15 13 2 17 17 C 1.53781 * 87.07962 * 220.01556 * 16 15 13 18 18 C 1.53779 * 87.08197 * 25.43414 * 17 16 15 19 19 H 1.09008 * 109.47507 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47604 * 300.00017 * 1 2 3 21 21 H 1.09005 * 109.47296 * 60.00305 * 1 2 3 22 22 H 1.09002 * 109.47761 * 305.14143 * 4 2 1 23 23 H 1.09004 * 109.47353 * 185.13616 * 4 2 1 24 24 H 0.97006 * 120.00049 * 179.97438 * 8 7 5 25 25 H 1.09005 * 109.47568 * 52.98626 * 14 13 2 26 26 H 1.09005 * 109.47375 * 172.98916 * 14 13 2 27 27 H 1.09003 * 109.47322 * 292.98132 * 14 13 2 28 28 H 1.09001 * 112.84662 * 43.02902 * 15 13 2 29 29 H 1.08997 * 113.61428 * 334.56570 * 16 15 13 30 30 H 1.09003 * 113.61495 * 105.46743 * 16 15 13 31 31 H 1.08999 * 113.61683 * 270.88162 * 17 16 15 32 32 H 1.09002 * 113.61292 * 139.98143 * 17 16 15 33 33 H 1.09000 * 113.61618 * 220.02091 * 18 17 16 34 34 H 1.08998 * 113.69446 * 89.12890 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6443 0.0587 -2.4764 6 1 1.0303 0.9419 -2.3801 7 6 2.0614 -0.3585 -3.7226 8 7 2.8090 -1.4340 -3.8398 9 14 1.5644 0.6040 -5.2444 10 1 2.0779 1.9935 -5.1408 11 1 2.1363 -0.0468 -6.4505 12 1 0.0836 0.6303 -5.3520 13 7 2.0196 -0.6925 1.1995 14 6 3.4765 -0.8721 1.1457 15 6 1.6221 0.0228 2.4195 16 6 2.6263 1.1029 2.8552 17 6 2.3719 0.6447 4.3009 18 6 1.9816 -0.7227 3.7155 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.6034 -1.7190 -1.2964 23 1 3.1261 -0.8017 -1.2044 24 1 3.1022 -1.7277 -4.7166 25 1 3.9546 0.0893 0.9577 26 1 3.8285 -1.2733 2.0962 27 1 3.7277 -1.5659 0.3433 28 1 0.5898 0.3715 2.3883 29 1 3.6437 0.9176 2.5109 30 1 2.2888 2.1196 2.6536 31 1 1.5451 1.1646 4.7847 32 1 3.2723 0.6160 4.9146 33 1 1.1237 -1.1800 4.2085 34 1 2.8219 -1.4084 3.6061 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695838770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:27 Heat of formation + Delta-G solvation = 17.538272 kcal Electronic energy + Delta-G solvation = -13035.998218 eV Core-core repulsion = 10969.409339 eV Total energy + Delta-G solvation = -2066.588879 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44934 -35.66003 -32.68735 -30.46259 -27.60581 -25.54332 -25.22419 -23.90020 -22.45387 -19.30934 -18.38309 -16.70577 -15.58930 -15.26674 -14.47205 -14.12357 -13.90856 -13.07318 -12.49926 -12.28822 -12.00627 -11.67917 -11.49723 -11.27312 -11.05466 -10.82898 -10.76435 -10.69199 -10.41984 -10.21401 -9.88542 -9.84243 -9.08487 -9.02661 -8.30634 -7.52918 -5.96984 -3.98423 3.34582 3.39065 3.41283 4.42093 4.58729 4.86040 4.89093 5.08788 5.24433 5.38744 5.70707 5.77897 5.84176 5.95819 6.02564 6.03326 6.08927 6.21612 6.25757 6.37155 6.40626 6.50980 6.67433 6.79688 6.98507 7.14855 7.62985 7.70290 7.87954 7.91978 8.12247 8.48167 9.07777 9.64540 11.14495 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066382 B = 0.008019 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.697671 B = 3490.813509 C = 3623.691526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.085 3.915 3 H 0.027 0.973 4 C 0.029 3.971 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.529 5.529 14 C 0.026 3.974 15 C 0.061 3.939 16 C -0.181 4.181 17 C -0.140 4.140 18 C -0.133 4.133 19 H 0.053 0.947 20 H 0.030 0.970 21 H 0.064 0.936 22 H 0.020 0.980 23 H 0.022 0.978 24 H 0.260 0.740 25 H 0.024 0.976 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 3.029 12.308 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 H 0.045 0.955 4 C -0.008 4.008 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.251 5.251 14 C -0.122 4.122 15 C -0.048 4.048 16 C -0.220 4.220 17 C -0.178 4.178 18 C -0.171 4.171 19 H 0.073 0.927 20 H 0.049 0.951 21 H 0.083 0.917 22 H 0.039 0.961 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.036 2.435 12.157 12.442 hybrid contribution 0.169 1.335 -0.936 1.639 sum -0.867 3.770 11.221 11.869 Atomic orbital electron populations 1.21760 0.95602 1.01481 0.99869 1.21808 0.94820 0.95387 0.90157 0.95471 1.19219 0.96575 0.95740 0.89306 1.21192 1.31946 1.11056 0.91413 0.92732 1.24985 0.95234 0.95128 0.98992 1.69957 1.35957 1.23725 1.23777 0.86687 0.78848 0.80107 0.82517 1.20359 1.21317 1.20254 1.62073 1.12058 1.49144 1.01870 1.22414 0.88131 1.00244 1.01423 1.23250 0.98661 0.92750 0.90143 1.23674 1.01723 0.99882 0.96735 1.22697 1.01032 0.97761 0.96329 1.23078 1.01443 0.96311 0.96310 0.92742 0.95073 0.91705 0.96115 0.95927 0.93002 0.95764 0.92702 0.90462 0.88208 0.89503 0.92125 0.90620 0.91889 0.91763 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.94 37.16 0.33 -2.22 16 2 C 0.09 1.83 2.08 -67.72 -0.14 1.69 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.03 0.75 4.14 -27.88 -0.12 0.64 16 5 C -0.52 -14.61 8.48 -34.44 -0.29 -14.91 16 6 H 0.05 1.49 6.92 -52.49 -0.36 1.13 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.53 -9.94 4.75 -225.93 -1.07 -11.01 16 14 C 0.03 0.46 7.41 60.06 0.45 0.91 16 15 C 0.06 0.95 3.67 -66.90 -0.25 0.71 16 16 C -0.18 -2.53 7.32 -25.92 -0.19 -2.72 16 17 C -0.14 -1.63 8.08 -25.92 -0.21 -1.84 16 18 C -0.13 -1.74 7.56 -25.92 -0.20 -1.94 16 19 H 0.05 1.09 8.14 -51.92 -0.42 0.66 16 20 H 0.03 0.52 6.26 -51.93 -0.33 0.20 16 21 H 0.06 1.33 6.88 -51.93 -0.36 0.98 16 22 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.02 0.62 6.17 -51.93 -0.32 0.30 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.43 6.75 -51.93 -0.35 0.08 16 26 H 0.05 0.83 6.08 -51.93 -0.32 0.52 16 27 H 0.08 1.53 6.54 -51.93 -0.34 1.19 16 28 H 0.10 1.54 6.07 -51.93 -0.32 1.22 16 29 H 0.09 1.26 5.70 -51.93 -0.30 0.96 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.10 6.36 -51.93 -0.33 0.77 16 LS Contribution 261.07 15.07 3.93 3.93 Total: -1.00 -29.41 261.07 -7.54 -36.95 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.41 Total: -2.23 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -0.71 Total: -18.12 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.34 Total: -37.28 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.41 -7.54 -36.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.484 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds