Wall clock time and date at job start Mon Mar 30 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46886 * 2 1 4 4 C 1.52994 * 109.46986 * 239.99461 * 2 1 3 5 5 C 1.50707 * 109.47286 * 65.14229 * 4 2 1 6 6 H 1.07998 * 119.99312 * 356.00735 * 5 4 2 7 7 C 1.37874 * 120.00138 * 176.27925 * 5 4 2 8 8 N 1.31508 * 120.00074 * 359.72716 * 7 5 4 9 9 Si 1.86798 * 119.99689 * 179.72210 * 7 5 4 10 10 H 1.48500 * 109.47022 * 60.00619 * 9 7 5 11 11 H 1.48501 * 109.47288 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47572 * 300.00354 * 9 7 5 13 13 N 1.46897 * 109.46682 * 119.99849 * 2 1 3 14 14 C 1.46900 * 110.99619 * 172.35333 * 13 2 1 15 15 C 1.46900 * 111.00312 * 296.30224 * 13 2 1 16 16 C 1.53783 * 113.61651 * 271.72379 * 15 13 2 17 17 C 1.53781 * 87.07962 * 220.01556 * 16 15 13 18 18 C 1.53779 * 87.08197 * 25.43414 * 17 16 15 19 19 H 1.09008 * 109.47507 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47604 * 300.00017 * 1 2 3 21 21 H 1.09005 * 109.47296 * 60.00305 * 1 2 3 22 22 H 1.09002 * 109.47761 * 305.14143 * 4 2 1 23 23 H 1.09004 * 109.47353 * 185.13616 * 4 2 1 24 24 H 0.97006 * 120.00049 * 179.97438 * 8 7 5 25 25 H 1.09005 * 109.47568 * 52.98626 * 14 13 2 26 26 H 1.09005 * 109.47375 * 172.98916 * 14 13 2 27 27 H 1.09003 * 109.47322 * 292.98132 * 14 13 2 28 28 H 1.09001 * 112.84662 * 43.02902 * 15 13 2 29 29 H 1.08997 * 113.61428 * 334.56570 * 16 15 13 30 30 H 1.09003 * 113.61495 * 105.46743 * 16 15 13 31 31 H 1.08999 * 113.61683 * 270.88162 * 17 16 15 32 32 H 1.09002 * 113.61292 * 139.98143 * 17 16 15 33 33 H 1.09000 * 113.61618 * 220.02091 * 18 17 16 34 34 H 1.08998 * 113.69446 * 89.12890 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6443 0.0587 -2.4764 6 1 1.0303 0.9419 -2.3801 7 6 2.0614 -0.3585 -3.7226 8 7 2.8090 -1.4340 -3.8398 9 14 1.5644 0.6040 -5.2444 10 1 2.0779 1.9935 -5.1408 11 1 2.1363 -0.0468 -6.4505 12 1 0.0836 0.6303 -5.3520 13 7 2.0196 -0.6925 1.1995 14 6 3.4765 -0.8721 1.1457 15 6 1.6221 0.0228 2.4195 16 6 2.6263 1.1029 2.8552 17 6 2.3719 0.6447 4.3009 18 6 1.9816 -0.7227 3.7155 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.6034 -1.7190 -1.2964 23 1 3.1261 -0.8017 -1.2044 24 1 3.1022 -1.7277 -4.7166 25 1 3.9546 0.0893 0.9577 26 1 3.8285 -1.2733 2.0962 27 1 3.7277 -1.5659 0.3433 28 1 0.5898 0.3715 2.3883 29 1 3.6437 0.9176 2.5109 30 1 2.2888 2.1196 2.6536 31 1 1.5451 1.1646 4.7847 32 1 3.2723 0.6160 4.9146 33 1 1.1237 -1.1800 4.2085 34 1 2.8219 -1.4084 3.6061 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695838770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:27 Heat of formation + Delta-G solvation = -0.859827 kcal Electronic energy + Delta-G solvation = -13036.796020 eV Core-core repulsion = 10969.409339 eV Total energy + Delta-G solvation = -2067.386681 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72013 -37.22192 -34.73546 -32.16289 -29.46425 -26.93532 -26.44194 -25.63601 -24.00457 -20.89802 -19.67172 -18.71945 -17.08467 -16.71484 -16.26320 -15.67629 -15.44860 -14.51863 -14.25791 -13.71722 -13.44963 -13.31085 -13.09109 -12.85052 -12.74403 -12.55854 -12.40724 -12.15049 -11.90565 -11.79857 -11.34884 -11.22735 -10.99652 -10.86312 -10.51993 -9.01419 -8.18142 -6.28056 1.39655 1.42652 1.50361 2.40900 3.11764 3.15487 3.79375 3.84177 3.99765 4.09646 4.33603 4.34250 4.46220 4.67267 4.72497 4.78570 4.83368 4.92869 5.02123 5.08746 5.11496 5.15369 5.20087 5.32375 5.39569 5.49279 5.56325 5.73778 5.82221 6.15470 6.40333 6.43993 6.88147 7.40125 8.93910 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066382 B = 0.008019 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.697671 B = 3490.813509 C = 3623.691526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.096 3.904 3 H 0.018 0.982 4 C 0.038 3.962 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.539 5.539 14 C 0.032 3.968 15 C 0.047 3.953 16 C -0.184 4.184 17 C -0.123 4.123 18 C -0.128 4.128 19 H 0.046 0.954 20 H 0.064 0.936 21 H 0.052 0.948 22 H -0.013 1.013 23 H -0.002 1.002 24 H 0.263 0.737 25 H 0.020 0.980 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 4.250 13.527 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.012 4.012 3 H 0.036 0.964 4 C 0.001 3.999 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.191 1.191 13 N -0.262 5.262 14 C -0.116 4.116 15 C -0.062 4.062 16 C -0.223 4.223 17 C -0.160 4.160 18 C -0.166 4.166 19 H 0.065 0.935 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.006 0.994 23 H 0.016 0.984 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.797 3.665 13.402 14.010 hybrid contribution 0.426 0.923 -1.270 1.627 sum -1.371 4.588 12.132 13.043 Atomic orbital electron populations 1.21663 0.94057 1.01310 1.00912 1.21510 0.95976 0.94150 0.89578 0.96396 1.19041 0.94828 0.94420 0.91629 1.21601 1.31957 1.11387 0.92457 0.92097 1.25935 0.95077 0.96109 1.02582 1.70102 1.37132 1.25453 1.24682 0.85541 0.78917 0.78755 0.78079 1.19288 1.20914 1.19118 1.62030 1.12339 1.49659 1.02138 1.22334 0.87999 0.99409 1.01849 1.23503 0.99257 0.94080 0.89332 1.23662 1.00639 0.99348 0.98628 1.22652 1.02273 0.96172 0.94932 1.23058 1.01820 0.97045 0.94681 0.93476 0.91759 0.92879 0.99421 0.98410 0.92871 0.96152 0.89744 0.93514 0.87852 0.90356 0.92104 0.88923 0.90353 0.90500 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 8.94 71.98 0.64 -4.09 16 2 C 0.10 4.15 2.08 44.91 0.09 4.24 16 3 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 4 C 0.04 2.08 4.14 29.85 0.12 2.20 16 5 C -0.54 -30.82 8.48 25.60 0.22 -30.60 16 6 H 0.06 3.35 6.92 -2.91 -0.02 3.33 16 7 C 0.00 0.03 5.46 84.65 0.46 0.50 16 8 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 9 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.54 -20.10 4.75 -868.71 -4.12 -24.23 16 14 C 0.03 1.16 7.41 127.69 0.95 2.10 16 15 C 0.05 1.36 3.67 45.44 0.17 1.53 16 16 C -0.18 -4.72 7.32 31.12 0.23 -4.49 16 17 C -0.12 -2.41 8.08 31.12 0.25 -2.16 16 18 C -0.13 -2.97 7.56 31.12 0.24 -2.73 16 19 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 20 H 0.06 2.04 6.26 -2.39 -0.01 2.03 16 21 H 0.05 2.15 6.88 -2.38 -0.02 2.14 16 22 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 23 H 0.00 -0.14 6.17 -2.39 -0.01 -0.15 16 24 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 25 H 0.02 0.73 6.75 -2.38 -0.02 0.72 16 26 H 0.08 2.49 6.08 -2.38 -0.01 2.48 16 27 H 0.05 1.94 6.54 -2.39 -0.02 1.93 16 28 H 0.10 2.91 6.07 -2.39 -0.01 2.90 16 29 H 0.08 2.15 5.70 -2.39 -0.01 2.14 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.91 6.36 -2.39 -0.02 1.89 16 Total: -1.00 -63.89 261.07 2.61 -61.27 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.06 Total: 7.11 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 3.37 Total: -33.50 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -3.84 Total: -81.68 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -63.89 2.61 -61.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.413 kcal (2) G-P(sol) polarization free energy of solvation -63.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds