Wall clock time and date at job start Mon Mar 30 2020 01:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47430 * 2 1 4 4 C 1.53002 * 109.47389 * 239.99797 * 2 1 3 5 5 C 1.50698 * 109.47221 * 172.96311 * 4 2 1 6 6 H 1.07998 * 119.99892 * 355.35895 * 5 4 2 7 7 C 1.37879 * 119.99638 * 175.08130 * 5 4 2 8 8 N 1.31521 * 119.99649 * 180.27336 * 7 5 4 9 9 Si 1.86796 * 120.00198 * 0.27747 * 7 5 4 10 10 H 1.48494 * 109.47311 * 90.00037 * 9 7 5 11 11 H 1.48508 * 109.46909 * 209.99929 * 9 7 5 12 12 H 1.48500 * 109.47171 * 329.99328 * 9 7 5 13 13 N 1.46906 * 109.46851 * 119.99855 * 2 1 3 14 14 C 1.47481 * 110.99955 * 194.51799 * 13 2 1 15 15 C 1.53512 * 87.93112 * 138.70468 * 14 13 2 16 16 C 1.47477 * 110.99947 * 290.49017 * 13 2 1 17 17 C 1.52995 * 113.47896 * 336.06078 * 16 13 2 18 18 C 1.52998 * 113.47537 * 106.53115 * 16 13 2 19 19 H 1.09005 * 109.46879 * 54.63274 * 1 2 3 20 20 H 1.08995 * 109.47295 * 174.63331 * 1 2 3 21 21 H 1.09002 * 109.47311 * 294.63601 * 1 2 3 22 22 H 1.09003 * 109.46950 * 52.95815 * 4 2 1 23 23 H 1.09007 * 109.46843 * 292.96287 * 4 2 1 24 24 H 0.96999 * 119.99866 * 180.02562 * 8 7 5 25 25 H 1.09001 * 113.47434 * 253.47164 * 14 13 2 26 26 H 1.08995 * 113.47679 * 23.94064 * 14 13 2 27 27 H 1.09004 * 114.17305 * 87.62375 * 15 14 13 28 28 H 1.08998 * 114.16980 * 220.32546 * 15 14 13 29 29 H 1.09003 * 109.46969 * 66.03021 * 17 16 13 30 30 H 1.08994 * 109.47638 * 186.02830 * 17 16 13 31 31 H 1.09005 * 109.47277 * 306.03485 * 17 16 13 32 32 H 1.09002 * 109.47548 * 60.00074 * 18 16 13 33 33 H 1.09001 * 109.47245 * 179.97438 * 18 16 13 34 34 H 1.08999 * 109.47300 * 299.99405 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5369 -0.5723 -1.3393 6 1 4.0623 0.0433 -0.6242 7 6 4.2363 -1.2265 -2.3312 8 7 5.5433 -1.1008 -2.4066 9 14 3.3276 -2.2913 -3.5680 10 1 2.9317 -1.4647 -4.7364 11 1 4.2151 -3.3932 -4.0192 12 1 2.1135 -2.8627 -2.9317 13 7 2.0196 -0.6925 1.1995 14 6 3.4524 -0.4206 1.4189 15 6 3.1409 -0.2879 2.9162 16 6 1.7414 0.0950 2.4150 17 6 1.5785 1.5925 2.1471 18 6 0.6097 -0.4809 3.2685 19 1 -0.3633 0.5949 -0.8381 20 1 -0.3633 -1.0231 -0.0961 21 1 -0.3634 0.4284 0.9341 22 1 1.5775 -0.2854 -2.1348 23 1 1.7832 -1.7789 -1.1884 24 1 6.0354 -1.5608 -3.1046 25 1 4.0963 -1.2679 1.1827 26 1 3.7930 0.5086 0.9622 27 1 3.1766 -1.2292 3.4647 28 1 3.6744 0.5226 3.4129 29 1 0.6847 1.7589 1.5457 30 1 1.4827 2.1228 3.0944 31 1 2.4518 1.9626 1.6100 32 1 0.8715 -1.4901 3.5862 33 1 0.4599 0.1484 4.1459 34 1 -0.3085 -0.5113 2.6819 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695904119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:59 Heat of formation + Delta-G solvation = 31.190301 kcal Electronic energy + Delta-G solvation = -13489.454092 eV Core-core repulsion = 11423.457210 eV Total energy + Delta-G solvation = -2065.996883 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35231 -34.12858 -32.07790 -30.81242 -27.98239 -27.18866 -26.35536 -22.68926 -22.19600 -19.58974 -17.72058 -16.49480 -15.45972 -14.88101 -14.74046 -14.07511 -13.35842 -12.69873 -12.50213 -12.19983 -12.06991 -11.93423 -11.61847 -11.52698 -11.20145 -11.09920 -10.96221 -10.65074 -10.50074 -9.97856 -9.73376 -9.53641 -9.26342 -8.81308 -8.46176 -7.95646 -5.97968 -3.94246 3.34864 3.42608 3.48332 4.51327 4.58935 4.98987 5.22387 5.37771 5.44042 5.67432 5.79178 5.80799 5.84423 5.94566 5.99499 6.07818 6.10960 6.23247 6.26882 6.38962 6.44164 6.51594 6.69956 6.75801 6.82493 6.93617 7.25183 7.34431 7.41752 7.86467 8.03549 8.58393 9.04793 9.65173 11.14310 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046857 B = 0.011567 C = 0.010293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.422185 B = 2420.043522 C = 2719.767353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 H 0.046 0.954 4 C -0.008 4.008 5 C -0.518 4.518 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.449 5.449 14 C 0.031 3.969 15 C -0.153 4.153 16 C 0.042 3.958 17 C -0.157 4.157 18 C -0.123 4.123 19 H 0.049 0.951 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.011 0.989 23 H 0.025 0.975 24 H 0.261 0.739 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 2.852 8.927 12.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.053 4.053 3 H 0.064 0.936 4 C -0.046 4.046 5 C -0.556 4.556 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.172 5.172 14 C -0.097 4.097 15 C -0.191 4.191 16 C -0.049 4.049 17 C -0.216 4.216 18 C -0.181 4.181 19 H 0.068 0.932 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.029 0.971 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.251 2.102 8.702 12.175 hybrid contribution -0.085 0.265 -0.915 0.956 sum -8.336 2.367 7.787 11.651 Atomic orbital electron populations 1.21975 0.96537 1.01527 1.00333 1.22091 0.93337 0.96828 0.93081 0.93610 1.19622 0.97190 0.96220 0.91565 1.21394 0.90324 1.29554 1.14337 0.89980 1.24989 0.94660 0.96274 0.97421 1.69911 1.06364 1.44133 1.34132 0.86842 0.80269 0.80689 0.81858 1.20605 1.21593 1.18958 1.69006 1.06499 1.41498 1.00209 1.23591 0.92121 1.02240 0.91753 1.23443 0.96075 1.01183 0.98383 1.22626 0.95369 0.92607 0.94292 1.22119 1.02617 0.95312 1.01504 1.21635 0.97766 1.00491 0.98175 0.93177 0.92697 0.93215 0.97069 0.95629 0.92935 0.89458 0.90932 0.89831 0.91791 0.91579 0.92656 0.92035 0.92348 0.93224 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.65 37.16 0.32 -2.19 16 2 C 0.06 1.13 1.56 -67.71 -0.11 1.02 16 3 H 0.05 0.95 5.61 -51.93 -0.29 0.66 16 4 C -0.01 -0.21 3.73 -27.88 -0.10 -0.31 16 5 C -0.52 -14.47 8.28 -34.44 -0.29 -14.76 16 6 H 0.08 2.38 5.03 -52.49 -0.26 2.12 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.91 -27.81 13.96 55.43 0.77 -27.04 16 9 Si 0.88 22.21 27.57 -169.99 -4.69 17.52 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.26 -6.57 6.41 56.52 0.36 -6.21 16 13 N -0.45 -8.83 5.92 -220.70 -1.31 -10.14 16 14 C 0.03 0.63 5.03 -7.54 -0.04 0.59 16 15 C -0.15 -2.43 7.59 -26.20 -0.20 -2.63 16 16 C 0.04 0.66 0.80 -135.33 -0.11 0.56 16 17 C -0.16 -2.29 7.46 37.16 0.28 -2.02 16 18 C -0.12 -1.69 9.33 37.16 0.35 -1.34 16 19 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 20 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.05 0.76 4.52 -51.93 -0.23 0.52 16 22 H 0.01 0.27 7.80 -51.93 -0.41 -0.13 16 23 H 0.03 0.66 6.86 -51.93 -0.36 0.30 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.09 1.97 7.93 -51.93 -0.41 1.56 16 26 H 0.07 1.55 5.30 -51.93 -0.28 1.28 16 27 H 0.08 1.27 8.00 -51.93 -0.42 0.85 16 28 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 29 H 0.07 0.95 5.50 -51.93 -0.29 0.66 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.97 6.34 -51.93 -0.33 0.64 16 32 H 0.06 0.81 7.97 -51.93 -0.41 0.39 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.75 6.66 -51.93 -0.35 0.41 16 LS Contribution 252.48 15.07 3.80 3.80 Total: -1.00 -29.74 252.48 -6.72 -36.47 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.31 Total: -1.39 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 0.01 Total: -19.22 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.53 Total: -37.18 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.69 Total: 17.52 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.74 -6.72 -36.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.655 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds