Wall clock time and date at job start Mon Mar 30 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47398 * 2 1 4 4 N 1.46899 * 109.46872 * 120.00440 * 2 1 3 5 5 C 1.46907 * 110.99774 * 206.50270 * 4 2 1 6 6 H 1.08992 * 109.46857 * 326.20415 * 5 4 2 7 7 C 1.53004 * 109.46986 * 86.20125 * 5 4 2 8 8 C 1.50700 * 109.47148 * 206.20001 * 5 4 2 9 9 H 1.08004 * 119.99623 * 0.02562 * 8 5 4 10 10 C 1.37873 * 119.99852 * 179.97438 * 8 5 4 11 11 N 1.31511 * 120.00149 * 0.02562 * 10 8 5 12 12 Si 1.86806 * 119.99938 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.46640 * 59.99971 * 12 10 8 14 14 H 1.48492 * 109.47268 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47090 * 300.00265 * 12 10 8 16 16 C 1.53001 * 109.47083 * 239.99746 * 2 1 3 17 17 C 1.53003 * 115.56179 * 274.31333 * 16 2 1 18 18 C 1.53006 * 117.49942 * 60.00328 * 16 2 1 19 19 C 1.53002 * 60.02979 * 107.50196 * 18 16 2 20 20 H 1.09006 * 109.46989 * 54.87783 * 1 2 3 21 21 H 1.08998 * 109.47259 * 174.87275 * 1 2 3 22 22 H 1.08999 * 109.46857 * 294.88292 * 1 2 3 23 23 H 1.00902 * 110.99896 * 330.45080 * 4 2 1 24 24 H 1.09010 * 109.46954 * 66.04765 * 7 5 4 25 25 H 1.09000 * 109.46871 * 186.04302 * 7 5 4 26 26 H 1.09000 * 109.47036 * 306.04813 * 7 5 4 27 27 H 0.97003 * 119.99775 * 180.02562 * 11 10 8 28 28 H 1.09008 * 109.47165 * 180.10595 * 17 16 2 29 29 H 1.08993 * 109.47664 * 300.10504 * 17 16 2 30 30 H 1.09002 * 109.46996 * 60.11193 * 17 16 2 31 31 H 1.08991 * 117.49521 * 0.02562 * 18 16 2 32 32 H 1.08996 * 117.49793 * 215.00000 * 18 16 2 33 33 H 1.09001 * 117.49850 * 107.48276 * 19 18 16 34 34 H 1.09000 * 117.49836 * 252.47259 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3523 -0.2062 1.5810 6 1 3.9147 0.0534 0.6842 7 6 3.2085 1.0315 2.4689 8 6 4.0831 -1.2852 2.3378 9 1 3.6055 -2.2372 2.5169 10 6 5.3618 -1.0574 2.8004 11 7 5.9434 0.1017 2.5818 12 14 6.2680 -2.3951 3.7379 13 1 6.4071 -3.5962 2.8757 14 1 7.6155 -1.9039 4.1227 15 1 5.5020 -2.7489 4.9598 16 6 2.0400 -0.7213 -1.2492 17 6 2.1622 -2.2418 -1.1300 18 6 1.6358 -0.1496 -2.6097 19 6 3.0744 0.0052 -2.1125 20 1 -0.3633 0.5913 -0.8406 21 1 -0.3634 -1.0235 -0.0918 22 1 -0.3633 0.4324 0.9323 23 1 1.3675 -0.5973 1.9635 24 1 2.7411 0.7494 3.4125 25 1 4.1936 1.4552 2.6639 26 1 2.5882 1.7714 1.9631 27 1 6.8432 0.2618 2.9070 28 1 2.5335 -2.6513 -2.0695 29 1 2.8562 -2.4887 -0.3267 30 1 1.1838 -2.6687 -0.9091 31 1 1.0069 0.7406 -2.6146 32 1 1.4565 -0.8567 -3.4196 33 1 3.8416 -0.6003 -2.5951 34 1 3.3918 0.9971 -1.7909 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706835415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:54 Heat of formation + Delta-G solvation = 12.236593 kcal Electronic energy + Delta-G solvation = -13192.423676 eV Core-core repulsion = 11125.604899 eV Total energy + Delta-G solvation = -2066.818777 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.39914 -35.20086 -32.59883 -30.20235 -27.80216 -26.65237 -25.04008 -22.68372 -21.78748 -20.21215 -17.97406 -16.14977 -15.08444 -14.86299 -14.57455 -13.71575 -13.36113 -12.61454 -12.29278 -12.10034 -11.86528 -11.60679 -11.40667 -11.33119 -11.04961 -10.84480 -10.75782 -10.55424 -10.20220 -10.04317 -9.77894 -9.63702 -9.00669 -8.86422 -8.30000 -7.13967 -5.92326 -3.94370 3.37538 3.41410 3.44744 4.27428 4.48859 5.03730 5.28630 5.37797 5.39937 5.53266 5.76756 5.82733 5.93321 5.98554 6.15883 6.29163 6.33486 6.44048 6.53142 6.56204 6.72416 6.74888 6.79753 6.90963 7.18004 7.19182 7.50816 7.78954 7.96159 8.36238 8.65288 8.72042 9.12590 9.70452 11.15178 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041705 B = 0.010360 C = 0.009819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.220271 B = 2702.012534 C = 2850.989647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.118 3.882 3 H 0.034 0.966 4 N -0.676 5.676 5 C 0.213 3.787 6 H 0.036 0.964 7 C -0.166 4.166 8 C -0.492 4.492 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.895 3.105 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.279 1.279 16 C -0.092 4.092 17 C -0.096 4.096 18 C -0.189 4.189 19 C -0.176 4.176 20 H 0.050 0.950 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.324 0.676 24 H 0.029 0.971 25 H 0.083 0.917 26 H 0.002 0.998 27 H 0.258 0.742 28 H 0.033 0.967 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.657 -0.007 -6.225 9.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.052 0.948 4 N -0.306 5.306 5 C 0.105 3.895 6 H 0.054 0.946 7 C -0.226 4.226 8 C -0.530 4.530 9 H 0.079 0.921 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.723 3.277 13 H -0.204 1.204 14 H -0.216 1.216 15 H -0.205 1.205 16 C -0.093 4.093 17 C -0.153 4.153 18 C -0.226 4.226 19 C -0.213 4.213 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.141 0.859 24 H 0.048 0.952 25 H 0.102 0.898 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.232 -0.459 -6.534 9.758 hybrid contribution 0.439 0.367 0.866 1.038 sum -6.793 -0.092 -5.668 8.847 Atomic orbital electron populations 1.21926 0.95947 1.01880 1.00694 1.20887 0.92850 0.94438 0.91087 0.94779 1.60731 1.05555 1.58961 1.05308 1.19183 0.84405 0.91453 0.94448 0.94581 1.22432 1.02021 0.99108 0.99028 1.21120 0.98624 0.99652 1.33651 0.92106 1.24938 0.97523 0.95535 0.96521 1.69892 1.14270 1.22453 1.47213 0.86616 0.78648 0.82156 0.80257 1.20358 1.21576 1.20468 1.21462 1.01646 0.95959 0.90214 1.21079 1.01902 0.91431 1.00901 1.23010 0.98573 1.02851 0.98204 1.23013 0.91891 1.01962 1.04450 0.93047 0.92162 0.93230 0.85850 0.95214 0.89780 0.97903 0.93168 0.94784 0.89755 0.93288 0.89689 0.89567 0.89367 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.99 37.16 0.33 -1.84 16 2 C 0.12 2.14 2.49 -67.71 -0.17 1.97 16 3 H 0.03 0.67 6.95 -51.93 -0.36 0.31 16 4 N -0.68 -14.18 4.94 -100.95 -0.50 -14.68 16 5 C 0.21 5.33 2.38 -68.86 -0.16 5.17 16 6 H 0.04 1.00 7.69 -51.93 -0.40 0.60 16 7 C -0.17 -4.06 8.84 37.16 0.33 -3.73 16 8 C -0.49 -13.58 8.84 -34.44 -0.30 -13.88 16 9 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 10 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 11 N -0.90 -25.95 11.39 55.43 0.63 -25.32 16 12 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C -0.09 -1.60 1.78 -154.47 -0.27 -1.87 16 17 C -0.10 -1.68 9.17 37.16 0.34 -1.34 16 18 C -0.19 -2.76 9.50 -26.73 -0.25 -3.01 16 19 C -0.18 -2.98 9.89 -26.69 -0.26 -3.25 16 20 H 0.05 0.68 7.48 -51.93 -0.39 0.29 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.70 8.02 -51.93 -0.42 0.28 16 23 H 0.32 6.53 7.99 -39.29 -0.31 6.22 16 24 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.08 2.26 6.26 -51.93 -0.32 1.94 16 26 H 0.00 0.04 7.49 -51.93 -0.39 -0.34 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.53 8.11 -51.92 -0.42 0.11 16 29 H 0.08 1.75 7.65 -51.93 -0.40 1.35 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.15 7.66 -51.93 -0.40 0.75 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.09 1.55 8.05 -51.93 -0.42 1.13 16 LS Contribution 274.55 15.07 4.14 4.14 Total: -1.00 -27.92 274.55 -7.16 -35.08 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.89 Total: 4.43 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -0.52 Total: -20.33 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.13 Total: -40.00 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.92 -7.16 -35.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706835415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.316 kcal (2) G-P(sol) polarization free energy of solvation -27.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds