Wall clock time and date at job start Mon Mar 30 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47398 * 2 1 4 4 N 1.46899 * 109.46872 * 120.00440 * 2 1 3 5 5 C 1.46907 * 110.99774 * 206.50270 * 4 2 1 6 6 H 1.08992 * 109.46857 * 326.20415 * 5 4 2 7 7 C 1.53004 * 109.46986 * 86.20125 * 5 4 2 8 8 C 1.50700 * 109.47148 * 206.20001 * 5 4 2 9 9 H 1.08004 * 119.99623 * 0.02562 * 8 5 4 10 10 C 1.37873 * 119.99852 * 179.97438 * 8 5 4 11 11 N 1.31511 * 120.00149 * 0.02562 * 10 8 5 12 12 Si 1.86806 * 119.99938 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.46640 * 59.99971 * 12 10 8 14 14 H 1.48492 * 109.47268 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47090 * 300.00265 * 12 10 8 16 16 C 1.53001 * 109.47083 * 239.99746 * 2 1 3 17 17 C 1.53003 * 115.56179 * 274.31333 * 16 2 1 18 18 C 1.53006 * 117.49942 * 60.00328 * 16 2 1 19 19 C 1.53002 * 60.02979 * 107.50196 * 18 16 2 20 20 H 1.09006 * 109.46989 * 54.87783 * 1 2 3 21 21 H 1.08998 * 109.47259 * 174.87275 * 1 2 3 22 22 H 1.08999 * 109.46857 * 294.88292 * 1 2 3 23 23 H 1.00902 * 110.99896 * 330.45080 * 4 2 1 24 24 H 1.09010 * 109.46954 * 66.04765 * 7 5 4 25 25 H 1.09000 * 109.46871 * 186.04302 * 7 5 4 26 26 H 1.09000 * 109.47036 * 306.04813 * 7 5 4 27 27 H 0.97003 * 119.99775 * 180.02562 * 11 10 8 28 28 H 1.09008 * 109.47165 * 180.10595 * 17 16 2 29 29 H 1.08993 * 109.47664 * 300.10504 * 17 16 2 30 30 H 1.09002 * 109.46996 * 60.11193 * 17 16 2 31 31 H 1.08991 * 117.49521 * 0.02562 * 18 16 2 32 32 H 1.08996 * 117.49793 * 215.00000 * 18 16 2 33 33 H 1.09001 * 117.49850 * 107.48276 * 19 18 16 34 34 H 1.09000 * 117.49836 * 252.47259 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3523 -0.2062 1.5810 6 1 3.9147 0.0534 0.6842 7 6 3.2085 1.0315 2.4689 8 6 4.0831 -1.2852 2.3378 9 1 3.6055 -2.2372 2.5169 10 6 5.3618 -1.0574 2.8004 11 7 5.9434 0.1017 2.5818 12 14 6.2680 -2.3951 3.7379 13 1 6.4071 -3.5962 2.8757 14 1 7.6155 -1.9039 4.1227 15 1 5.5020 -2.7489 4.9598 16 6 2.0400 -0.7213 -1.2492 17 6 2.1622 -2.2418 -1.1300 18 6 1.6358 -0.1496 -2.6097 19 6 3.0744 0.0052 -2.1125 20 1 -0.3633 0.5913 -0.8406 21 1 -0.3634 -1.0235 -0.0918 22 1 -0.3633 0.4324 0.9323 23 1 1.3675 -0.5973 1.9635 24 1 2.7411 0.7494 3.4125 25 1 4.1936 1.4552 2.6639 26 1 2.5882 1.7714 1.9631 27 1 6.8432 0.2618 2.9070 28 1 2.5335 -2.6513 -2.0695 29 1 2.8562 -2.4887 -0.3267 30 1 1.1838 -2.6687 -0.9091 31 1 1.0069 0.7406 -2.6146 32 1 1.4565 -0.8567 -3.4196 33 1 3.8416 -0.6003 -2.5951 34 1 3.3918 0.9971 -1.7909 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706835415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:53 Heat of formation + Delta-G solvation = -4.010946 kcal Electronic energy + Delta-G solvation = -13193.128222 eV Core-core repulsion = 11125.604899 eV Total energy + Delta-G solvation = -2067.523323 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.81854 -36.95146 -34.48882 -31.92548 -29.17474 -28.33905 -27.16853 -24.06410 -23.06475 -22.19136 -19.40364 -18.22010 -16.82326 -16.33790 -16.24202 -15.40994 -14.90521 -14.33070 -13.85752 -13.67455 -13.35623 -13.25744 -12.96052 -12.90840 -12.77435 -12.55349 -12.35357 -12.18365 -12.08264 -11.72318 -11.61436 -11.09967 -10.81934 -10.45128 -10.31194 -8.87282 -8.06000 -6.15559 1.43175 1.44783 1.52250 2.45716 2.97570 3.22717 3.58789 3.95282 4.08241 4.21732 4.38314 4.51456 4.58689 4.76925 4.80071 4.87734 4.92552 5.01566 5.03606 5.10603 5.16483 5.20413 5.31346 5.42249 5.43011 5.52006 5.70505 5.74752 5.88334 6.33163 6.74161 6.93504 7.02803 7.54078 8.99763 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041705 B = 0.010360 C = 0.009819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.220271 B = 2702.012534 C = 2850.989647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.116 3.884 3 H 0.015 0.985 4 N -0.675 5.675 5 C 0.223 3.777 6 H 0.002 0.998 7 C -0.154 4.154 8 C -0.508 4.508 9 H 0.054 0.946 10 C 0.007 3.993 11 N -0.925 5.925 12 Si 0.956 3.044 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.271 1.271 16 C -0.115 4.115 17 C -0.088 4.088 18 C -0.150 4.150 19 C -0.197 4.197 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.330 0.670 24 H 0.031 0.969 25 H 0.055 0.945 26 H 0.022 0.978 27 H 0.258 0.742 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 -0.548 -6.852 11.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.006 3.994 3 H 0.033 0.967 4 N -0.305 5.305 5 C 0.114 3.886 6 H 0.020 0.980 7 C -0.213 4.213 8 C -0.546 4.546 9 H 0.072 0.928 10 C -0.190 4.190 11 N -0.565 5.565 12 Si 0.782 3.218 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.197 1.197 16 C -0.116 4.116 17 C -0.145 4.145 18 C -0.187 4.187 19 C -0.235 4.235 20 H 0.091 0.909 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.147 0.853 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.687 -1.003 -7.166 11.306 hybrid contribution 0.872 0.556 1.019 1.452 sum -7.815 -0.447 -6.147 9.952 Atomic orbital electron populations 1.21856 0.92838 1.02782 1.02055 1.20984 0.95304 0.93098 0.90064 0.96665 1.60614 1.04070 1.59358 1.06460 1.18861 0.86005 0.91084 0.92651 0.98049 1.22246 1.00734 0.99192 0.99156 1.21422 0.99264 1.00019 1.33924 0.92788 1.25695 0.98364 0.97562 0.97419 1.70027 1.14447 1.24037 1.48010 0.85640 0.77463 0.79534 0.79120 1.19994 1.21235 1.19657 1.21519 1.02979 0.95771 0.91345 1.20961 1.01531 0.91853 1.00186 1.23075 0.96114 1.03121 0.96373 1.23026 0.93512 1.01257 1.05667 0.90853 0.91577 0.92601 0.85276 0.95030 0.92567 0.95951 0.93249 0.93221 0.93791 0.92048 0.88023 0.87363 0.89540 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.99 71.98 0.65 -3.03 16 2 C 0.12 4.08 2.49 44.92 0.11 4.19 16 3 H 0.02 0.60 6.95 -2.39 -0.02 0.58 16 4 N -0.67 -28.26 4.94 -473.30 -2.34 -30.60 16 5 C 0.22 11.38 2.38 44.17 0.11 11.48 16 6 H 0.00 0.09 7.69 -2.39 -0.02 0.07 16 7 C -0.15 -7.57 8.84 71.98 0.64 -6.94 16 8 C -0.51 -28.48 8.84 25.60 0.23 -28.25 16 9 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 10 C 0.01 0.41 5.30 84.65 0.45 0.86 16 11 N -0.92 -54.43 11.39 21.45 0.24 -54.19 16 12 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 16 C -0.12 -3.86 1.78 -52.15 -0.09 -3.96 16 17 C -0.09 -2.99 9.17 71.98 0.66 -2.33 16 18 C -0.15 -3.92 9.50 30.60 0.29 -3.63 16 19 C -0.20 -6.60 9.89 30.62 0.30 -6.30 16 20 H 0.07 1.65 7.48 -2.38 -0.02 1.63 16 21 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.05 1.42 8.02 -2.39 -0.02 1.40 16 23 H 0.33 13.03 7.99 -89.69 -0.72 12.31 16 24 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.06 3.08 6.26 -2.39 -0.01 3.07 16 26 H 0.02 0.96 7.49 -2.39 -0.02 0.95 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.05 1.49 8.11 -2.38 -0.02 1.47 16 29 H 0.04 1.83 7.65 -2.39 -0.02 1.82 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.10 2.35 7.66 -2.39 -0.02 2.33 16 32 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.07 2.62 8.05 -2.39 -0.02 2.60 16 Total: -1.00 -60.18 274.55 3.60 -56.58 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.33 Total: 19.30 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 3.34 Total: -37.90 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.10 Total: -84.79 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -60.18 3.60 -56.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706835415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.572 kcal (2) G-P(sol) polarization free energy of solvation -60.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds