Wall clock time and date at job start Mon Mar 30 2020 02:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46933 * 2 1 4 4 C 1.46846 * 111.00315 * 314.20978 * 3 2 1 5 5 C 1.53031 * 109.52615 * 174.16312 * 4 3 2 6 6 C 1.53124 * 109.31335 * 59.15629 * 5 4 3 7 7 C 1.53120 * 109.15437 * 302.40851 * 6 5 4 8 8 H 1.09002 * 109.50153 * 297.62726 * 7 6 5 9 9 C 1.50702 * 109.50188 * 177.55491 * 7 6 5 10 10 H 1.08002 * 120.00299 * 240.08085 * 9 7 6 11 11 C 1.37884 * 119.99942 * 59.79643 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.46846 * 111.00025 * 189.99708 * 3 2 1 18 18 H 1.08998 * 109.46399 * 305.85777 * 17 3 2 19 19 C 1.53007 * 109.45184 * 65.82986 * 17 3 2 20 20 H 1.09003 * 109.46909 * 60.00057 * 1 2 3 21 21 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47264 * 300.00093 * 1 2 3 23 23 H 1.08996 * 109.47264 * 239.99907 * 2 1 3 24 24 H 1.09003 * 109.46909 * 119.99943 * 2 1 3 25 25 H 1.09008 * 109.45742 * 294.17930 * 4 3 2 26 26 H 1.09003 * 109.46404 * 54.13615 * 4 3 2 27 27 H 1.08997 * 109.50465 * 179.11842 * 5 4 3 28 28 H 1.09005 * 109.50051 * 299.19271 * 5 4 3 29 29 H 1.08991 * 109.55823 * 182.48249 * 6 5 4 30 30 H 1.09007 * 109.48925 * 62.28934 * 6 5 4 31 31 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 32 32 H 1.09002 * 109.46713 * 180.02562 * 19 17 3 33 33 H 1.09004 * 109.46647 * 300.04768 * 19 17 3 34 34 H 1.08999 * 109.47090 * 60.04808 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1998 -0.9826 5 6 1.7264 3.6621 -0.8540 6 6 3.2355 3.7665 -1.0916 7 6 3.9654 2.8705 -0.0871 8 1 3.7650 3.2206 0.9255 9 6 5.4480 2.9208 -0.3526 10 1 5.9829 2.0165 -0.6028 11 6 6.1207 4.1224 -0.2819 12 7 5.4694 5.2236 0.0227 13 14 7.9569 4.1859 -0.6185 14 1 8.2242 3.7060 -1.9982 15 1 8.4377 5.5840 -0.4785 16 1 8.6689 3.3185 0.3540 17 6 3.4680 1.4312 -0.2380 18 1 3.9755 0.7937 0.4860 19 6 3.7678 0.9339 -1.6536 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.5178 1.8418 -1.9876 26 1 0.2222 2.1206 -0.7996 27 1 1.1991 4.2641 -1.5940 28 1 1.4894 4.0250 0.1461 29 1 3.5553 4.7998 -0.9575 30 1 3.4674 3.4411 -2.1057 31 1 5.9427 6.0688 0.0729 32 1 4.8429 0.9676 -1.8304 33 1 3.4135 -0.0913 -1.7611 34 1 3.2607 1.5715 -2.3777 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709922542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:13 Heat of formation + Delta-G solvation = -6.914338 kcal Electronic energy + Delta-G solvation = -13507.735935 eV Core-core repulsion = 11440.086711 eV Total energy + Delta-G solvation = -2067.649224 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.89952 -34.25967 -32.01408 -31.19223 -28.81458 -26.52057 -24.92114 -23.19322 -21.32863 -20.26861 -17.58697 -16.27868 -15.33101 -14.83130 -14.40740 -13.97884 -13.61774 -12.59569 -12.52734 -12.49387 -11.87583 -11.71771 -11.44061 -11.25160 -10.97775 -10.80690 -10.63550 -10.59685 -10.30998 -9.97593 -9.68925 -9.24347 -8.83376 -8.62211 -8.24389 -7.45550 -5.92525 -3.97816 3.34405 3.39261 3.41505 4.44237 4.67709 5.36720 5.37643 5.48950 5.65156 5.82547 5.91522 5.95423 6.05639 6.18613 6.23742 6.26841 6.38962 6.40366 6.47505 6.75400 6.78898 6.85587 7.01345 7.08890 7.33751 7.48320 7.80092 7.84211 7.96436 8.15266 8.23942 8.54651 9.05406 9.65557 11.13440 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.058189 B = 0.010595 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.075289 B = 2642.236075 C = 2903.857446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.053 3.947 5 C -0.118 4.118 6 C -0.111 4.111 7 C 0.062 3.938 8 H 0.032 0.968 9 C -0.510 4.510 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.889 5.889 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.089 3.911 18 H 0.064 0.936 19 C -0.173 4.173 20 H 0.055 0.945 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.030 0.970 24 H 0.067 0.933 25 H 0.026 0.974 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.259 0.741 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 -6.438 -1.987 9.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.083 4.083 3 N -0.258 5.258 4 C -0.074 4.074 5 C -0.156 4.156 6 C -0.149 4.149 7 C 0.043 3.957 8 H 0.050 0.950 9 C -0.549 4.549 10 H 0.073 0.927 11 C -0.139 4.139 12 N -0.528 5.528 13 Si 0.717 3.283 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.019 4.019 18 H 0.083 0.917 19 C -0.231 4.231 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.079 -6.044 -1.487 9.426 hybrid contribution 1.192 -0.295 -1.039 1.608 sum -5.887 -6.339 -2.526 9.012 Atomic orbital electron populations 1.21927 0.96021 1.00865 1.02224 1.22085 0.94785 0.91208 1.00237 1.62309 1.05353 1.08581 1.49519 1.22153 0.97150 0.94847 0.93296 1.21681 0.99423 0.93840 1.00661 1.21676 0.90547 1.04316 0.98389 1.18636 0.93645 0.87516 0.95892 0.94987 1.21155 0.92995 0.93585 1.47152 0.92726 1.24939 0.97827 0.95850 0.95317 1.69889 1.35444 0.98651 1.48813 0.86723 0.86030 0.76896 0.78692 1.20461 1.21377 1.20371 1.21829 0.84991 1.00909 0.94149 0.91749 1.22375 1.02949 0.98141 0.99660 0.92592 0.93058 0.92091 0.95176 0.91502 0.95576 0.91991 0.93791 0.92282 0.89273 0.94864 0.93092 0.91342 0.95218 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.16 37.16 0.34 -1.66 16 2 C 0.04 0.71 5.87 -3.82 -0.02 0.69 16 3 N -0.53 -10.20 4.75 -226.69 -1.08 -11.28 16 4 C 0.05 0.97 4.55 -3.84 -0.02 0.95 16 5 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16 6 C -0.11 -2.66 4.72 -26.61 -0.13 -2.79 16 7 C 0.06 1.56 2.05 -91.69 -0.19 1.37 16 8 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 9 C -0.51 -13.89 7.83 -34.44 -0.27 -14.15 16 10 H 0.05 1.46 6.65 -52.49 -0.35 1.11 16 11 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 12 N -0.89 -25.51 11.35 55.43 0.63 -24.88 16 13 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.09 1.90 2.43 -67.72 -0.16 1.74 16 18 H 0.06 1.41 8.12 -51.93 -0.42 0.99 16 19 C -0.17 -3.43 7.94 37.16 0.30 -3.14 16 20 H 0.06 0.72 6.21 -51.93 -0.32 0.40 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.03 0.47 6.07 -51.93 -0.32 0.16 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.48 6.19 -51.92 -0.32 0.15 16 26 H 0.06 1.00 5.81 -51.93 -0.30 0.69 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.09 2.39 6.14 -51.93 -0.32 2.07 16 30 H 0.03 0.79 6.56 -51.93 -0.34 0.45 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.07 1.43 6.57 -51.93 -0.34 1.09 16 33 H 0.03 0.52 6.35 -51.93 -0.33 0.19 16 34 H 0.05 1.09 4.80 -51.93 -0.25 0.85 16 LS Contribution 249.54 15.07 3.76 3.76 Total: -1.00 -27.79 249.54 -7.40 -35.19 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.28 Total: -1.22 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -0.41 Total: -17.91 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.45 Total: -36.16 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.79 -7.40 -35.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709922542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.281 kcal (2) G-P(sol) polarization free energy of solvation -27.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds