Wall clock time and date at job start Mon Mar 30 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46933 * 2 1 4 4 C 1.46846 * 111.00315 * 314.20978 * 3 2 1 5 5 C 1.53031 * 109.52615 * 174.16312 * 4 3 2 6 6 C 1.53124 * 109.31335 * 59.15629 * 5 4 3 7 7 C 1.53120 * 109.15437 * 302.40851 * 6 5 4 8 8 H 1.09002 * 109.50153 * 297.62726 * 7 6 5 9 9 C 1.50702 * 109.50188 * 177.55491 * 7 6 5 10 10 H 1.08002 * 120.00299 * 240.08085 * 9 7 6 11 11 C 1.37884 * 119.99942 * 59.79643 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.46846 * 111.00025 * 189.99708 * 3 2 1 18 18 H 1.08998 * 109.46399 * 305.85777 * 17 3 2 19 19 C 1.53007 * 109.45184 * 65.82986 * 17 3 2 20 20 H 1.09003 * 109.46909 * 60.00057 * 1 2 3 21 21 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47264 * 300.00093 * 1 2 3 23 23 H 1.08996 * 109.47264 * 239.99907 * 2 1 3 24 24 H 1.09003 * 109.46909 * 119.99943 * 2 1 3 25 25 H 1.09008 * 109.45742 * 294.17930 * 4 3 2 26 26 H 1.09003 * 109.46404 * 54.13615 * 4 3 2 27 27 H 1.08997 * 109.50465 * 179.11842 * 5 4 3 28 28 H 1.09005 * 109.50051 * 299.19271 * 5 4 3 29 29 H 1.08991 * 109.55823 * 182.48249 * 6 5 4 30 30 H 1.09007 * 109.48925 * 62.28934 * 6 5 4 31 31 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 32 32 H 1.09002 * 109.46713 * 180.02562 * 19 17 3 33 33 H 1.09004 * 109.46647 * 300.04768 * 19 17 3 34 34 H 1.08999 * 109.47090 * 60.04808 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1998 -0.9826 5 6 1.7264 3.6621 -0.8540 6 6 3.2355 3.7665 -1.0916 7 6 3.9654 2.8705 -0.0871 8 1 3.7650 3.2206 0.9255 9 6 5.4480 2.9208 -0.3526 10 1 5.9829 2.0165 -0.6028 11 6 6.1207 4.1224 -0.2819 12 7 5.4694 5.2236 0.0227 13 14 7.9569 4.1859 -0.6185 14 1 8.2242 3.7060 -1.9982 15 1 8.4377 5.5840 -0.4785 16 1 8.6689 3.3185 0.3540 17 6 3.4680 1.4312 -0.2380 18 1 3.9755 0.7937 0.4860 19 6 3.7678 0.9339 -1.6536 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.5178 1.8418 -1.9876 26 1 0.2222 2.1206 -0.7996 27 1 1.1991 4.2641 -1.5940 28 1 1.4894 4.0250 0.1461 29 1 3.5553 4.7998 -0.9575 30 1 3.4674 3.4411 -2.1057 31 1 5.9427 6.0688 0.0729 32 1 4.8429 0.9676 -1.8304 33 1 3.4135 -0.0913 -1.7611 34 1 3.2607 1.5715 -2.3777 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709922542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:12 Heat of formation + Delta-G solvation = -24.137329 kcal Electronic energy + Delta-G solvation = -13508.482780 eV Core-core repulsion = 11440.086711 eV Total energy + Delta-G solvation = -2068.396069 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.51109 -35.99213 -33.84155 -32.85913 -30.34338 -28.19057 -26.78338 -24.78532 -23.02738 -21.81524 -19.29328 -18.27426 -17.00239 -16.60424 -15.86070 -15.59882 -15.23201 -14.45372 -14.17186 -13.95895 -13.50020 -13.14335 -13.11170 -12.83115 -12.72273 -12.48521 -12.34196 -12.08265 -11.98013 -11.58399 -11.54019 -11.12740 -10.65096 -10.56786 -10.32154 -8.94006 -8.04207 -6.16908 1.42072 1.43126 1.50494 2.44585 3.20909 3.22678 4.14360 4.16949 4.25281 4.39522 4.48838 4.51922 4.62227 4.70410 4.73619 4.84444 4.94864 5.01276 5.14198 5.16175 5.22456 5.31793 5.33659 5.42003 5.50809 5.58409 5.68609 6.03462 6.20111 6.29168 6.49227 6.54351 6.95435 7.49935 9.00371 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.058189 B = 0.010595 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.075289 B = 2642.236075 C = 2903.857446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 N -0.549 5.549 4 C 0.058 3.942 5 C -0.114 4.114 6 C -0.103 4.103 7 C 0.060 3.940 8 H -0.013 1.013 9 C -0.525 4.525 10 H 0.055 0.945 11 C 0.011 3.989 12 N -0.918 5.918 13 Si 0.951 3.049 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.095 3.905 18 H 0.054 0.946 19 C -0.162 4.162 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.057 0.943 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.032 0.968 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.029 0.971 31 H 0.258 0.742 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 -7.880 -2.836 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 N -0.273 5.273 4 C -0.069 4.069 5 C -0.152 4.152 6 C -0.142 4.142 7 C 0.041 3.959 8 H 0.006 0.994 9 C -0.564 4.564 10 H 0.073 0.927 11 C -0.187 4.187 12 N -0.557 5.557 13 Si 0.777 3.223 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.013 4.013 18 H 0.072 0.928 19 C -0.220 4.220 20 H 0.079 0.921 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.050 0.950 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.930 -7.504 -2.337 11.165 hybrid contribution 1.430 0.145 -0.732 1.613 sum -6.500 -7.359 -3.069 10.287 Atomic orbital electron populations 1.21880 0.93579 1.02622 1.02279 1.22199 0.96796 0.88944 1.00551 1.62225 1.03874 1.11059 1.50152 1.22154 0.98565 0.92868 0.93339 1.21618 0.96707 0.96257 1.00592 1.21472 0.93325 1.01754 0.97616 1.18550 0.93289 0.90381 0.93641 0.99435 1.21515 0.94405 0.93647 1.46822 0.92663 1.25725 1.02144 0.95593 0.95281 1.70046 1.36981 0.99030 1.49692 0.85723 0.80877 0.76898 0.78803 1.19656 1.21161 1.19801 1.21535 0.86824 0.97939 0.94981 0.92798 1.22235 1.01920 0.99636 0.98216 0.92071 0.90555 0.92408 0.94613 0.91405 0.95000 0.89024 0.91463 0.93611 0.92763 0.95202 0.93252 0.92924 0.92442 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.16 71.98 0.66 -2.61 16 2 C 0.04 1.22 5.87 86.30 0.51 1.73 16 3 N -0.55 -20.12 4.75 -871.11 -4.14 -24.26 16 4 C 0.06 1.97 4.55 86.32 0.39 2.36 16 5 C -0.11 -4.49 6.09 30.65 0.19 -4.31 16 6 C -0.10 -5.04 4.72 30.68 0.14 -4.89 16 7 C 0.06 3.11 2.05 -11.49 -0.02 3.09 16 8 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 9 C -0.53 -29.18 7.83 25.60 0.20 -28.98 16 10 H 0.06 2.99 6.65 -2.91 -0.02 2.97 16 11 C 0.01 0.61 5.30 84.66 0.45 1.06 16 12 N -0.92 -54.22 11.35 21.45 0.24 -53.98 16 13 Si 0.95 44.24 29.54 68.60 2.03 46.26 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 C 0.10 4.06 2.43 44.94 0.11 4.17 16 18 H 0.05 2.37 8.12 -2.39 -0.02 2.35 16 19 C -0.16 -6.18 7.94 71.98 0.57 -5.61 16 20 H 0.06 1.31 6.21 -2.39 -0.01 1.29 16 21 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.04 1.00 6.07 -2.39 -0.01 0.98 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.03 1.06 6.19 -2.38 -0.01 1.05 16 26 H 0.09 2.61 5.81 -2.39 -0.01 2.59 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.05 3.01 6.14 -2.39 -0.01 2.99 16 30 H 0.03 1.43 6.56 -2.38 -0.02 1.41 16 31 H 0.26 14.60 8.31 -92.70 -0.77 13.82 16 32 H 0.05 2.16 6.57 -2.39 -0.02 2.14 16 33 H 0.06 1.86 6.35 -2.38 -0.02 1.85 16 34 H 0.05 2.00 4.80 -2.39 -0.01 1.98 16 Total: -1.00 -60.53 249.54 2.39 -58.14 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.06 Total: 7.83 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 3.20 Total: -33.99 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -3.90 Total: -78.24 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -60.53 2.39 -58.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709922542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.999 kcal (2) G-P(sol) polarization free energy of solvation -60.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds