Wall clock time and date at job start Mon Mar 30 2020 02:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46894 * 109.47025 * 2 1 4 4 C 1.46903 * 111.00141 * 163.75360 * 3 2 1 5 5 H 1.08997 * 109.46854 * 309.13153 * 4 3 2 6 6 C 1.52997 * 109.47099 * 69.12846 * 4 3 2 7 7 C 1.52997 * 109.47263 * 189.13043 * 4 3 2 8 8 C 1.50699 * 109.47297 * 65.00088 * 7 4 3 9 9 H 1.08003 * 119.99794 * 0.02562 * 8 7 4 10 10 C 1.37880 * 120.00044 * 179.97438 * 8 7 4 11 11 N 1.31505 * 120.00012 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99864 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47016 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47333 * 120.00132 * 12 10 8 15 15 H 1.48505 * 109.46632 * 239.99938 * 12 10 8 16 16 C 1.46900 * 111.00472 * 287.70639 * 3 2 1 17 17 C 1.53001 * 117.50324 * 139.22040 * 16 3 2 18 18 C 1.52997 * 60.00314 * 252.51829 * 17 16 3 19 19 H 1.09004 * 109.47187 * 67.60852 * 1 2 3 20 20 H 1.08993 * 109.47097 * 187.61387 * 1 2 3 21 21 H 1.09004 * 109.47099 * 307.61378 * 1 2 3 22 22 H 1.08997 * 109.46927 * 240.00287 * 2 1 3 23 23 H 1.08994 * 109.47021 * 120.00000 * 2 1 3 24 24 H 1.08997 * 109.47434 * 182.94615 * 6 4 3 25 25 H 1.08998 * 109.47022 * 302.94600 * 6 4 3 26 26 H 1.09000 * 109.46876 * 62.93756 * 6 4 3 27 27 H 1.08996 * 109.47003 * 304.99805 * 7 4 3 28 28 H 1.09001 * 109.46885 * 185.00083 * 7 4 3 29 29 H 0.97001 * 119.99861 * 180.02562 * 11 10 8 30 30 H 1.09001 * 115.55004 * 284.93846 * 16 3 2 31 31 H 1.09002 * 117.49315 * 0.02562 * 17 16 3 32 32 H 1.08996 * 117.50156 * 145.01958 * 17 16 3 33 33 H 1.09004 * 117.49595 * 252.51320 * 18 17 16 34 34 H 1.08993 * 117.50222 * 107.49316 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4366 1.4424 0.3837 5 1 3.5853 0.8858 1.3089 6 6 4.2908 0.8254 -0.7256 7 6 3.8493 2.9006 0.5939 8 6 3.0952 3.4721 1.7668 9 1 2.3922 2.8566 2.3084 10 6 3.3035 4.7804 2.1490 11 7 4.1606 5.5293 1.4904 12 14 2.3692 5.4885 3.6034 13 1 1.4727 4.4488 4.1695 14 1 3.3329 5.9311 4.6428 15 1 1.5588 6.6488 3.1535 16 6 1.8020 2.0204 -1.3064 17 6 1.3265 3.4747 -1.3143 18 6 0.3609 2.3521 -1.6992 19 1 -0.3634 0.3915 -0.9502 20 1 -0.3633 -1.0185 0.1362 21 1 -0.3633 0.6272 0.8141 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 5.3366 0.8205 -0.4187 25 1 3.9618 -0.1970 -0.9113 26 1 4.1823 1.4132 -1.6371 27 1 3.6180 3.4764 -0.3022 28 1 4.9201 2.9503 0.7913 29 1 4.3074 6.4496 1.7596 30 1 2.4808 1.7082 -2.1001 31 1 1.1757 3.9600 -0.3500 32 1 1.6927 4.1196 -2.1130 33 1 0.0917 2.2584 -2.7513 34 1 -0.4256 2.0989 -0.9883 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709960971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:33 Heat of formation + Delta-G solvation = 24.318192 kcal Electronic energy + Delta-G solvation = -13336.468541 eV Core-core repulsion = 11270.173662 eV Total energy + Delta-G solvation = -2066.294880 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.54673 -34.48419 -32.95719 -31.58865 -27.95708 -27.17826 -23.18191 -22.27916 -21.68235 -20.75715 -18.44358 -16.10665 -15.50238 -15.00988 -14.37375 -14.35257 -13.24030 -12.95587 -12.50458 -12.39843 -11.88039 -11.73290 -11.46207 -11.19684 -11.05710 -10.70433 -10.53220 -10.45795 -10.35688 -9.99987 -9.42363 -9.39802 -9.07896 -8.86341 -8.20745 -7.42279 -5.83572 -3.80422 3.40156 3.47941 3.53419 4.47490 4.52467 4.60660 5.45735 5.52659 5.55584 5.63690 5.63912 5.83597 5.86832 5.95442 5.99124 6.09835 6.11744 6.20446 6.31534 6.42838 6.54925 6.63656 6.69046 6.78352 7.07804 7.11776 7.63256 7.83050 8.02162 8.11684 8.19408 8.65834 9.25757 9.80352 11.28367 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033582 B = 0.011933 C = 0.011227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.583648 B = 2345.835805 C = 2493.485863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 N -0.486 5.486 4 C 0.089 3.911 5 H 0.068 0.932 6 C -0.183 4.183 7 C 0.029 3.971 8 C -0.484 4.484 9 H 0.058 0.942 10 C 0.051 3.949 11 N -0.903 5.903 12 Si 0.885 3.115 13 H -0.274 1.274 14 H -0.288 1.288 15 H -0.287 1.287 16 C 0.017 3.983 17 C -0.145 4.145 18 C -0.192 4.192 19 H 0.061 0.939 20 H 0.045 0.955 21 H 0.062 0.938 22 H 0.023 0.977 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.255 0.745 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 -8.337 -5.248 11.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.075 4.075 3 N -0.210 5.210 4 C -0.019 4.019 5 H 0.086 0.914 6 C -0.242 4.242 7 C -0.008 4.008 8 C -0.523 4.523 9 H 0.077 0.923 10 C -0.148 4.148 11 N -0.544 5.544 12 Si 0.714 3.286 13 H -0.198 1.198 14 H -0.215 1.215 15 H -0.214 1.214 16 C -0.092 4.092 17 C -0.183 4.183 18 C -0.230 4.230 19 H 0.080 0.920 20 H 0.064 0.936 21 H 0.081 0.919 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.032 0.968 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.274 -7.913 -4.880 10.689 hybrid contribution 0.097 0.033 0.175 0.203 sum -5.177 -7.881 -4.705 10.538 Atomic orbital electron populations 1.22022 0.95918 1.00413 1.02699 1.21975 0.95559 0.90446 0.99496 1.61982 1.19197 1.14362 1.25438 1.21930 0.84177 1.00775 0.95028 0.91425 1.22517 1.01139 0.99368 1.01157 1.19192 0.95764 0.88073 0.97758 1.21186 1.22212 0.96044 1.12816 0.92330 1.24977 0.95673 0.97406 0.96770 1.69974 1.35862 1.07790 1.40766 0.86646 0.79856 0.79017 0.83126 1.19849 1.21492 1.21377 1.22151 0.95898 0.99348 0.91767 1.22969 1.01056 0.90755 1.03489 1.23212 0.93584 1.05777 1.00405 0.91985 0.93638 0.91928 0.95896 0.91749 0.92695 0.94270 0.92866 0.95541 0.96755 0.93503 0.90673 0.86799 0.90013 0.90123 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.88 37.16 0.33 -1.85 16 2 C 0.05 0.86 5.09 -3.82 -0.02 0.84 16 3 N -0.49 -9.42 4.27 -218.72 -0.93 -10.35 16 4 C 0.09 1.85 2.25 -67.71 -0.15 1.70 16 5 H 0.07 1.44 7.88 -51.93 -0.41 1.03 16 6 C -0.18 -3.25 8.55 37.16 0.32 -2.93 16 7 C 0.03 0.75 4.24 -27.88 -0.12 0.63 16 8 C -0.48 -13.53 8.83 -34.44 -0.30 -13.83 16 9 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 10 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 11 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 12 Si 0.88 22.12 29.54 -169.99 -5.02 17.10 16 13 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 C 0.02 0.31 3.74 -67.71 -0.25 0.06 16 17 C -0.15 -2.77 9.04 -26.73 -0.24 -3.02 16 18 C -0.19 -3.06 8.60 -26.73 -0.23 -3.29 16 19 H 0.06 0.85 5.26 -51.93 -0.27 0.57 16 20 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.02 0.35 7.22 -51.93 -0.37 -0.02 16 23 H 0.06 1.02 7.82 -51.93 -0.41 0.62 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.62 6.91 -51.93 -0.36 0.26 16 26 H 0.05 0.95 6.33 -51.93 -0.33 0.62 16 27 H 0.03 0.71 6.20 -51.93 -0.32 0.39 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.08 1.34 6.18 -51.93 -0.32 1.02 16 31 H 0.11 2.57 8.14 -51.93 -0.42 2.15 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.58 6.02 -51.93 -0.31 1.27 16 LS Contribution 265.94 15.07 4.01 4.01 Total: -1.00 -29.28 265.94 -7.59 -36.86 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.61 Total: -0.86 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -0.77 Total: -20.33 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.20 Total: -36.78 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.28 -7.59 -36.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709960971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.182 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds