Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46894 * 109.47025 * 2 1 4 4 C 1.46903 * 111.00141 * 163.75360 * 3 2 1 5 5 H 1.08997 * 109.46854 * 309.13153 * 4 3 2 6 6 C 1.52997 * 109.47099 * 69.12846 * 4 3 2 7 7 C 1.52997 * 109.47263 * 189.13043 * 4 3 2 8 8 C 1.50699 * 109.47297 * 65.00088 * 7 4 3 9 9 H 1.08003 * 119.99794 * 0.02562 * 8 7 4 10 10 C 1.37880 * 120.00044 * 179.97438 * 8 7 4 11 11 N 1.31505 * 120.00012 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99864 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47016 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47333 * 120.00132 * 12 10 8 15 15 H 1.48505 * 109.46632 * 239.99938 * 12 10 8 16 16 C 1.46900 * 111.00472 * 287.70639 * 3 2 1 17 17 C 1.53001 * 117.50324 * 139.22040 * 16 3 2 18 18 C 1.52997 * 60.00314 * 252.51829 * 17 16 3 19 19 H 1.09004 * 109.47187 * 67.60852 * 1 2 3 20 20 H 1.08993 * 109.47097 * 187.61387 * 1 2 3 21 21 H 1.09004 * 109.47099 * 307.61378 * 1 2 3 22 22 H 1.08997 * 109.46927 * 240.00287 * 2 1 3 23 23 H 1.08994 * 109.47021 * 120.00000 * 2 1 3 24 24 H 1.08997 * 109.47434 * 182.94615 * 6 4 3 25 25 H 1.08998 * 109.47022 * 302.94600 * 6 4 3 26 26 H 1.09000 * 109.46876 * 62.93756 * 6 4 3 27 27 H 1.08996 * 109.47003 * 304.99805 * 7 4 3 28 28 H 1.09001 * 109.46885 * 185.00083 * 7 4 3 29 29 H 0.97001 * 119.99861 * 180.02562 * 11 10 8 30 30 H 1.09001 * 115.55004 * 284.93846 * 16 3 2 31 31 H 1.09002 * 117.49315 * 0.02562 * 17 16 3 32 32 H 1.08996 * 117.50156 * 145.01958 * 17 16 3 33 33 H 1.09004 * 117.49595 * 252.51320 * 18 17 16 34 34 H 1.08993 * 117.50222 * 107.49316 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4366 1.4424 0.3837 5 1 3.5853 0.8858 1.3089 6 6 4.2908 0.8254 -0.7256 7 6 3.8493 2.9006 0.5939 8 6 3.0952 3.4721 1.7668 9 1 2.3922 2.8566 2.3084 10 6 3.3035 4.7804 2.1490 11 7 4.1606 5.5293 1.4904 12 14 2.3692 5.4885 3.6034 13 1 1.4727 4.4488 4.1695 14 1 3.3329 5.9311 4.6428 15 1 1.5588 6.6488 3.1535 16 6 1.8020 2.0204 -1.3064 17 6 1.3265 3.4747 -1.3143 18 6 0.3609 2.3521 -1.6992 19 1 -0.3634 0.3915 -0.9502 20 1 -0.3633 -1.0185 0.1362 21 1 -0.3633 0.6272 0.8141 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 5.3366 0.8205 -0.4187 25 1 3.9618 -0.1970 -0.9113 26 1 4.1823 1.4132 -1.6371 27 1 3.6180 3.4764 -0.3022 28 1 4.9201 2.9503 0.7913 29 1 4.3074 6.4496 1.7596 30 1 2.4808 1.7082 -2.1001 31 1 1.1757 3.9600 -0.3500 32 1 1.6927 4.1196 -2.1130 33 1 0.0917 2.2584 -2.7513 34 1 -0.4256 2.0989 -0.9883 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709960971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = 6.524187 kcal Electronic energy + Delta-G solvation = -13337.240147 eV Core-core repulsion = 11270.173662 eV Total energy + Delta-G solvation = -2067.066486 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02650 -36.07273 -34.83334 -33.23143 -29.63745 -28.84369 -25.16441 -23.64079 -23.06528 -22.35970 -19.99360 -18.30729 -16.99390 -16.57490 -16.27783 -15.76580 -14.83532 -14.32552 -14.16409 -13.89913 -13.63769 -13.30846 -13.09715 -12.83663 -12.60634 -12.47495 -12.33438 -12.03758 -11.77196 -11.72735 -11.12782 -11.01834 -10.83430 -10.65457 -10.42408 -8.88107 -8.05998 -6.09117 1.40159 1.41756 1.54093 2.48813 3.03661 3.12454 3.29723 4.11445 4.21516 4.23729 4.31476 4.40178 4.44555 4.58827 4.71857 4.76985 4.83316 4.87400 4.95841 5.10199 5.19190 5.23443 5.28707 5.38371 5.47814 5.53422 5.57120 5.79212 5.97104 6.39382 6.56655 6.59510 7.04221 7.55444 9.06101 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033582 B = 0.011933 C = 0.011227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.583648 B = 2345.835805 C = 2493.485863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 N -0.507 5.507 4 C 0.094 3.906 5 H 0.060 0.940 6 C -0.172 4.172 7 C 0.037 3.963 8 C -0.488 4.488 9 H 0.052 0.948 10 C -0.002 4.002 11 N -0.938 5.938 12 Si 0.949 3.051 13 H -0.267 1.267 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.010 3.990 17 C -0.172 4.172 18 C -0.154 4.154 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.044 0.956 22 H 0.038 0.962 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.007 0.993 28 H -0.015 1.015 29 H 0.256 0.744 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -9.849 -5.729 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 N -0.232 5.232 4 C -0.014 4.014 5 H 0.079 0.921 6 C -0.231 4.231 7 C 0.000 4.000 8 C -0.527 4.527 9 H 0.070 0.930 10 C -0.198 4.198 11 N -0.580 5.580 12 Si 0.776 3.224 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.210 1.210 16 C -0.099 4.099 17 C -0.210 4.210 18 C -0.191 4.191 19 H 0.088 0.912 20 H 0.090 0.910 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.003 0.997 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.643 -9.444 -5.359 12.729 hybrid contribution 0.519 0.492 0.317 0.782 sum -6.124 -8.953 -5.042 11.961 Atomic orbital electron populations 1.21970 0.94308 1.01774 1.02380 1.22070 0.96821 0.88444 1.00189 1.61859 1.17995 1.16833 1.26468 1.21636 0.86186 0.97377 0.96172 0.92149 1.22373 1.00584 1.00472 0.99659 1.19028 0.93625 0.91306 0.96076 1.21418 1.21824 0.96160 1.13273 0.92998 1.25752 0.96598 0.97937 0.99480 1.70094 1.37397 1.08092 1.42443 0.85630 0.78647 0.78261 0.79882 1.19161 1.20947 1.21025 1.22239 0.97952 0.98154 0.91576 1.22791 1.04660 0.91753 1.01756 1.23277 0.92103 1.01430 1.02285 0.91241 0.91026 0.93687 0.94340 0.91789 0.92617 0.91610 0.93062 0.97434 0.99717 0.93470 0.89862 0.91068 0.89686 0.86803 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.88 71.98 0.64 -3.09 16 2 C 0.05 1.55 5.09 86.31 0.44 1.98 16 3 N -0.51 -19.13 4.27 -845.90 -3.62 -22.75 16 4 C 0.09 3.92 2.25 44.91 0.10 4.02 16 5 H 0.06 2.56 7.88 -2.39 -0.02 2.54 16 6 C -0.17 -5.87 8.55 71.98 0.62 -5.25 16 7 C 0.04 1.94 4.24 29.85 0.13 2.07 16 8 C -0.49 -27.93 8.83 25.60 0.23 -27.70 16 9 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 10 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 11 N -0.94 -57.86 13.29 21.45 0.28 -57.58 16 12 Si 0.95 46.08 29.54 68.60 2.03 48.11 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 15 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 16 C 0.01 0.33 3.74 44.92 0.17 0.50 16 17 C -0.17 -6.59 9.04 30.59 0.28 -6.31 16 18 C -0.15 -4.51 8.60 30.60 0.26 -4.25 16 19 H 0.07 1.64 5.26 -2.38 -0.01 1.63 16 20 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.04 1.03 7.22 -2.39 -0.02 1.02 16 23 H 0.06 1.89 7.82 -2.39 -0.02 1.87 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.89 6.91 -2.39 -0.02 1.87 16 26 H 0.05 1.76 6.33 -2.39 -0.02 1.74 16 27 H 0.01 0.41 6.20 -2.39 -0.01 0.40 16 28 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.08 2.80 6.18 -2.39 -0.01 2.78 16 31 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.10 2.99 6.02 -2.39 -0.01 2.98 16 Total: -1.00 -63.72 265.94 3.06 -60.66 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.05 Total: 9.24 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 3.32 Total: -37.68 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -3.33 Total: -80.33 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -63.72 3.06 -60.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709960971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.183 kcal (2) G-P(sol) polarization free energy of solvation -63.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds