Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47524 * 2 1 4 4 C 1.53000 * 109.47060 * 240.00127 * 2 1 3 5 5 C 1.50707 * 109.47303 * 175.00137 * 4 2 1 6 6 H 1.07998 * 119.99577 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00284 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99890 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00032 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47540 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47325 * 120.00335 * 9 7 5 12 12 H 1.48505 * 109.47375 * 239.99813 * 9 7 5 13 13 N 1.46902 * 109.47083 * 120.00512 * 2 1 3 14 14 C 1.46906 * 110.99573 * 274.99770 * 13 2 1 15 15 C 1.54264 * 110.03085 * 272.16524 * 14 13 2 16 16 C 1.54889 * 104.19796 * 217.10477 * 15 14 13 17 17 C 1.54891 * 102.74377 * 37.94448 * 16 15 14 18 18 C 1.53871 * 110.03224 * 155.00203 * 14 13 2 19 19 H 1.09004 * 109.46766 * 59.99858 * 1 2 3 20 20 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47023 * 299.99973 * 1 2 3 22 22 H 1.08997 * 109.47474 * 294.99907 * 4 2 1 23 23 H 1.08999 * 109.47164 * 55.00102 * 4 2 1 24 24 H 0.96998 * 119.99881 * 180.02562 * 8 7 5 25 25 H 1.00896 * 111.00219 * 38.95409 * 13 2 1 26 26 H 1.09001 * 110.01477 * 33.60857 * 14 13 2 27 27 H 1.08997 * 110.49318 * 335.78927 * 15 14 13 28 28 H 1.09001 * 110.48476 * 98.42991 * 15 14 13 29 29 H 1.09001 * 110.75929 * 279.63390 * 16 15 14 30 30 H 1.08997 * 110.91658 * 156.32948 * 16 15 14 31 31 H 1.09003 * 110.48385 * 203.38029 * 17 16 15 32 32 H 1.08998 * 110.59890 * 80.79481 * 17 16 15 33 33 H 1.08995 * 110.03133 * 238.57308 * 18 14 13 34 34 H 1.09007 * 110.03168 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5396 7 6 4.2305 -1.1935 -2.3578 8 7 3.5764 -1.8378 -3.2996 9 14 6.0920 -1.0611 -2.4368 10 1 6.5837 -0.2909 -1.2663 11 1 6.6863 -2.4219 -2.4184 12 1 6.4862 -0.3659 -3.6885 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2225 2.3469 15 6 3.4467 0.9422 2.3748 16 6 3.7915 1.0444 3.8813 17 6 3.2815 -0.3068 4.4411 18 6 1.9775 -0.5716 3.6607 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.7517 -1.7715 -1.2057 23 1 1.6054 -0.2617 -2.1370 24 1 4.0609 -2.2452 -4.0346 25 1 1.4496 -1.4980 1.4099 26 1 1.2754 0.9527 2.2864 27 1 4.1993 0.3536 1.8502 28 1 3.3629 1.9357 1.9343 29 1 3.2624 1.8781 4.3430 30 1 4.8670 1.1423 4.0286 31 1 3.0773 -0.2247 5.5086 32 1 4.0067 -1.0983 4.2521 33 1 1.1200 -0.2263 4.2382 34 1 1.8795 -1.6360 3.4468 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709994798.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -44.921310 kcal Electronic energy + Delta-G solvation = -12945.953363 eV Core-core repulsion = 10876.656033 eV Total energy + Delta-G solvation = -2069.297330 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60775 -36.90581 -34.57470 -31.55538 -29.51776 -29.12649 -27.04356 -24.97319 -21.84545 -20.96732 -20.74212 -18.37082 -17.00139 -16.62296 -16.18238 -15.39732 -15.25564 -14.55405 -14.12049 -14.06739 -13.65458 -13.23691 -13.19167 -12.68451 -12.41503 -12.22778 -12.02930 -11.90832 -11.84752 -11.68974 -11.59480 -11.36574 -11.06724 -11.03664 -10.48510 -8.94611 -8.09035 -6.13209 1.39962 1.40877 1.54021 2.47495 3.23136 3.47220 3.75245 3.86618 4.15169 4.27408 4.45723 4.55181 4.58141 4.67128 4.69425 4.88179 4.89970 4.93886 5.07633 5.12949 5.21213 5.24617 5.27627 5.37161 5.42682 5.52988 5.58952 5.74429 5.91638 6.38423 6.58115 6.81499 7.01151 7.52058 9.03522 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032046 B = 0.010706 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.537437 B = 2614.717888 C = 3251.616647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.053 0.947 4 C 0.037 3.963 5 C -0.493 4.493 6 H 0.056 0.944 7 C -0.009 4.009 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.676 5.676 14 C 0.082 3.918 15 C -0.119 4.119 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.121 4.121 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.063 0.937 22 H -0.010 1.010 23 H -0.010 1.010 24 H 0.258 0.742 25 H 0.335 0.665 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 4.650 14.614 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 H 0.072 0.928 4 C 0.000 4.000 5 C -0.531 4.531 6 H 0.074 0.926 7 C -0.205 4.205 8 N -0.585 5.585 9 Si 0.782 3.218 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.308 5.308 14 C -0.028 4.028 15 C -0.157 4.157 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.159 4.159 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.082 0.918 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.067 0.933 25 H 0.154 0.846 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.356 4.645 14.307 15.226 hybrid contribution -0.036 -0.120 -0.614 0.627 sum -2.392 4.525 13.693 14.618 Atomic orbital electron populations 1.22412 0.96859 1.01731 1.01772 1.21458 0.91920 0.96650 0.91051 0.92824 1.19004 0.95223 0.94119 0.91694 1.21518 0.93349 1.31920 1.06358 0.92551 1.25881 1.02922 0.95830 0.95854 1.70108 1.36947 1.38268 1.13158 0.85522 0.80693 0.77666 0.77880 1.19015 1.20892 1.20748 1.60572 1.57981 1.09170 1.03067 1.22222 0.96401 0.93958 0.90192 1.22436 0.97222 0.98916 0.97173 1.22459 1.01007 0.98034 0.93985 1.22278 0.96427 0.97018 0.99728 1.22322 0.98898 0.99979 0.94666 0.92683 0.92802 0.91766 0.99179 0.99214 0.93340 0.84625 0.94020 0.93248 0.93129 0.90348 0.91441 0.89858 0.92548 0.90224 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.66 9.15 71.98 0.66 -5.00 16 2 C 0.10 4.11 2.37 44.91 0.11 4.22 16 3 H 0.05 2.31 7.77 -2.39 -0.02 2.29 16 4 C 0.04 1.99 4.65 29.85 0.14 2.13 16 5 C -0.49 -28.80 8.84 25.60 0.23 -28.57 16 6 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 7 C -0.01 -0.56 5.46 84.65 0.46 -0.10 16 8 N -0.94 -59.25 13.29 21.45 0.28 -58.96 16 9 Si 0.96 46.63 29.54 68.60 2.03 48.65 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 N -0.68 -25.51 5.73 -465.77 -2.67 -28.18 16 14 C 0.08 2.49 3.03 45.64 0.14 2.63 16 15 C -0.12 -3.77 6.40 31.67 0.20 -3.57 16 16 C -0.12 -2.76 6.91 31.89 0.22 -2.54 16 17 C -0.12 -2.59 6.83 31.67 0.22 -2.38 16 18 C -0.12 -2.90 6.48 31.32 0.20 -2.70 16 19 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 20 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 21 H 0.06 1.80 7.46 -2.39 -0.02 1.79 16 22 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 23 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 25 H 0.33 11.75 7.75 -89.70 -0.70 11.06 16 26 H 0.04 1.22 7.16 -2.39 -0.02 1.20 16 27 H 0.05 1.91 8.05 -2.39 -0.02 1.89 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.63 7.47 -2.38 -0.02 1.61 16 Total: -1.00 -65.31 273.12 2.56 -62.74 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.35 Total: 11.62 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 2.57 Total: -35.88 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -2.38 Total: -87.14 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -65.31 2.56 -62.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994798.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.822 kcal (2) G-P(sol) polarization free energy of solvation -65.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds