Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46788 * 2 1 4 4 C 1.36932 * 120.00207 * 95.52332 * 3 2 1 5 5 H 1.07995 * 120.00102 * 36.79623 * 4 3 2 6 6 C 1.38825 * 119.99911 * 216.79947 * 4 3 2 7 7 N 1.31617 * 119.99777 * 213.67411 * 6 4 3 8 8 Si 1.86794 * 119.99843 * 33.67391 * 6 4 3 9 9 H 1.48498 * 109.47186 * 94.09612 * 8 6 4 10 10 H 1.48498 * 109.47500 * 334.09790 * 8 6 4 11 11 H 1.48503 * 109.47011 * 214.09732 * 8 6 4 12 12 C 1.46505 * 119.99656 * 275.52040 * 3 2 1 13 13 C 1.53001 * 109.47328 * 275.63346 * 12 3 2 14 14 H 1.09009 * 115.54739 * 330.67729 * 13 12 3 15 15 C 1.52994 * 117.50166 * 116.37574 * 13 12 3 16 16 C 1.52996 * 117.50480 * 185.00377 * 13 12 3 17 17 C 1.53002 * 117.49371 * 359.97438 * 16 13 12 18 18 C 1.52995 * 117.50239 * 145.02200 * 16 13 12 19 19 H 1.09001 * 109.46972 * 181.69622 * 1 2 3 20 20 H 1.09006 * 109.46988 * 301.69723 * 1 2 3 21 21 H 1.09002 * 109.47095 * 61.69565 * 1 2 3 22 22 H 1.08998 * 109.47243 * 239.99915 * 2 1 3 23 23 H 1.09002 * 109.47235 * 119.99388 * 2 1 3 24 24 H 0.97000 * 119.99559 * 179.97438 * 7 6 4 25 25 H 1.08993 * 109.47305 * 35.63415 * 12 3 2 26 26 H 1.09003 * 109.46915 * 155.63948 * 12 3 2 27 27 H 1.09003 * 117.50422 * 214.98435 * 15 13 12 28 28 H 1.09005 * 117.49858 * 0.02562 * 15 13 12 29 29 H 1.09001 * 109.46794 * 60.00903 * 17 16 13 30 30 H 1.09002 * 109.47118 * 179.97438 * 17 16 13 31 31 H 1.09001 * 109.47633 * 300.00395 * 17 16 13 32 32 H 1.08996 * 109.47194 * 59.99732 * 18 16 13 33 33 H 1.08998 * 109.47046 * 180.02562 * 18 16 13 34 34 H 1.09007 * 109.46965 * 299.99688 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3541 1.9888 1.1803 5 1 2.8301 1.4190 1.9646 6 6 2.0826 3.3371 1.3688 7 7 2.8967 4.0776 2.0908 8 14 0.5621 4.1004 0.5977 9 1 -0.5524 4.0828 1.5789 10 1 0.1739 3.3224 -0.6061 11 1 0.8559 5.5027 0.2073 12 6 2.1473 2.1125 -1.2629 13 6 3.4921 1.7776 -1.9112 14 1 4.2962 1.5223 -1.2208 15 6 3.4659 1.0598 -3.2620 16 6 3.8695 2.5337 -3.1866 17 6 2.8729 3.5665 -3.7165 18 6 5.3466 2.8732 -3.3957 19 1 -0.3633 -1.0272 0.0304 20 1 -0.3633 0.5400 0.8744 21 1 -0.3633 0.4873 -0.9048 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 2.7072 5.0198 2.2222 25 1 1.3386 1.8239 -1.9342 26 1 2.0942 3.1839 -1.0694 27 1 4.2528 0.3320 -3.4607 28 1 2.4906 0.8265 -3.6892 29 1 2.7122 4.3367 -2.9621 30 1 3.2706 4.0236 -4.6226 31 1 1.9262 3.0756 -3.9421 32 1 5.9306 1.9533 -3.4228 33 1 5.4666 3.4081 -4.3378 34 1 5.6949 3.5007 -2.5752 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722874867.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = 32.776123 kcal Electronic energy + Delta-G solvation = -13223.887932 eV Core-core repulsion = 11157.959816 eV Total energy + Delta-G solvation = -2065.928116 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.30115 -35.54616 -31.89031 -30.00485 -28.62534 -27.33162 -25.64290 -23.65971 -20.99060 -19.86926 -18.19956 -16.65570 -15.07972 -14.83318 -14.05520 -13.69803 -13.42155 -13.31161 -12.77443 -12.23981 -12.15405 -11.91219 -11.81607 -11.55310 -11.23925 -11.00894 -10.76127 -10.67036 -10.60246 -10.13813 -9.93375 -9.56107 -9.12538 -8.85533 -8.38700 -6.76041 -6.02989 -3.28864 3.39263 3.51672 3.56957 4.26557 4.59917 4.95345 5.23030 5.30600 5.36014 5.48098 5.59304 5.95558 5.97839 5.98694 6.10573 6.22233 6.24023 6.27413 6.30513 6.34518 6.38460 6.51182 6.57869 6.68874 6.74754 6.80705 6.85116 7.08177 7.14767 8.09002 8.43882 9.08003 9.78844 10.24231 11.13264 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.027647 B = 0.014740 C = 0.012163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.514800 B = 1899.153911 C = 2301.452665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.144 3.856 3 N -0.601 5.601 4 C -0.274 4.274 5 H 0.074 0.926 6 C 0.046 3.954 7 N -0.882 5.882 8 Si 0.845 3.155 9 H -0.292 1.292 10 H -0.262 1.262 11 H -0.295 1.295 12 C 0.183 3.817 13 C -0.138 4.138 14 H 0.105 0.895 15 C -0.182 4.182 16 C -0.141 4.141 17 C -0.112 4.112 18 C -0.109 4.109 19 H 0.038 0.962 20 H 0.053 0.947 21 H 0.039 0.961 22 H 0.036 0.964 23 H 0.051 0.949 24 H 0.262 0.738 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 -3.792 -10.262 10.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.018 3.982 3 N -0.323 5.323 4 C -0.402 4.402 5 H 0.092 0.908 6 C -0.156 4.156 7 N -0.522 5.522 8 Si 0.672 3.328 9 H -0.219 1.219 10 H -0.186 1.186 11 H -0.221 1.221 12 C 0.057 3.943 13 C -0.158 4.158 14 H 0.123 0.877 15 C -0.219 4.219 16 C -0.142 4.142 17 C -0.169 4.169 18 C -0.167 4.167 19 H 0.057 0.943 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.140 -3.639 -10.159 10.792 hybrid contribution -0.945 0.577 -0.326 1.154 sum -1.084 -3.062 -10.485 10.976 Atomic orbital electron populations 1.22360 1.00149 0.99244 1.01288 1.20865 0.91361 0.87021 0.98975 1.44115 1.74970 1.10868 1.02303 1.18682 1.34076 0.93322 0.94154 0.90813 1.25443 0.97347 0.96390 0.96386 1.70067 1.33909 1.06251 1.41950 0.87366 0.87338 0.78075 0.80053 1.21914 1.18629 1.22145 1.20688 0.90866 0.96146 0.86641 1.23512 1.02339 1.01059 0.88908 0.87661 1.23229 1.01630 0.93846 1.03190 1.21514 0.95619 0.92912 1.04123 1.21287 0.97552 0.98040 1.00034 1.21290 0.93285 1.01017 1.01072 0.94275 0.92786 0.94170 0.94588 0.93004 0.92829 0.94903 0.92298 0.89946 0.89754 0.92264 0.92925 0.92808 0.92971 0.92972 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 10.23 37.16 0.38 -2.82 16 2 C 0.14 2.94 6.42 -4.04 -0.03 2.91 16 3 N -0.60 -14.48 2.06 -173.23 -0.36 -14.83 16 4 C -0.27 -7.70 9.76 -15.06 -0.15 -7.85 16 5 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 6 C 0.05 1.33 5.00 -17.43 -0.09 1.24 16 7 N -0.88 -26.86 13.97 55.49 0.78 -26.09 16 8 Si 0.84 21.78 26.32 -169.99 -4.47 17.30 16 9 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 10 H -0.26 -6.45 5.88 56.52 0.33 -6.12 16 11 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 12 C 0.18 4.06 3.27 -4.04 -0.01 4.04 16 13 C -0.14 -2.70 5.73 -90.62 -0.52 -3.21 16 14 H 0.11 2.28 8.14 -51.92 -0.42 1.86 16 15 C -0.18 -2.92 9.47 -26.73 -0.25 -3.18 16 16 C -0.14 -2.34 2.70 -154.51 -0.42 -2.75 16 17 C -0.11 -1.75 8.86 37.16 0.33 -1.42 16 18 C -0.11 -1.60 9.85 37.16 0.37 -1.24 16 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 21 H 0.04 0.75 8.13 -51.93 -0.42 0.32 16 22 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 23 H 0.05 1.06 8.00 -51.93 -0.42 0.64 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 26 H 0.06 1.43 4.22 -51.93 -0.22 1.21 16 27 H 0.08 1.21 8.05 -51.93 -0.42 0.80 16 28 H 0.08 1.30 7.94 -51.93 -0.41 0.89 16 29 H 0.06 1.00 7.83 -51.93 -0.41 0.59 16 30 H 0.05 0.70 7.92 -51.93 -0.41 0.28 16 31 H 0.05 0.81 7.90 -51.93 -0.41 0.40 16 32 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16 33 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 274.41 15.07 4.14 4.14 Total: -1.00 -29.46 274.41 -6.39 -35.85 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.08 Total: -2.10 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -0.39 Total: -14.28 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.42 Total: -40.92 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.47 Total: 17.30 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.46 -6.39 -35.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722874867.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.630 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds