Wall clock time and date at job start Mon Mar 30 2020 02:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47218 * 2 1 4 4 C 1.36930 * 120.00077 * 95.18629 * 3 2 1 5 5 H 1.08007 * 119.99996 * 35.49343 * 4 3 2 6 6 C 1.38815 * 120.00355 * 215.49477 * 4 3 2 7 7 N 1.31622 * 119.99916 * 202.24698 * 6 4 3 8 8 Si 1.86797 * 119.99791 * 22.24941 * 6 4 3 9 9 H 1.48497 * 109.47079 * 264.67522 * 8 6 4 10 10 H 1.48499 * 109.47112 * 24.67525 * 8 6 4 11 11 H 1.48500 * 109.47262 * 144.67197 * 8 6 4 12 12 C 1.46502 * 119.99876 * 275.18867 * 3 2 1 13 13 C 1.53001 * 109.46850 * 269.99717 * 12 3 2 14 14 H 1.08991 * 115.55142 * 29.33359 * 13 12 3 15 15 C 1.53001 * 117.49953 * 243.62014 * 13 12 3 16 16 C 1.52994 * 60.00276 * 252.51353 * 15 13 12 17 17 C 1.53000 * 117.50251 * 252.51307 * 16 15 13 18 18 C 1.53007 * 117.51968 * 107.47718 * 16 15 13 19 19 H 1.09005 * 109.47055 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47314 * 299.99704 * 1 2 3 21 21 H 1.09003 * 109.47233 * 60.00030 * 1 2 3 22 22 H 1.09007 * 109.47064 * 239.99606 * 2 1 3 23 23 H 1.09001 * 109.47233 * 120.00515 * 2 1 3 24 24 H 0.96995 * 119.99436 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.47296 * 30.00093 * 12 3 2 26 26 H 1.09002 * 109.46524 * 150.00233 * 12 3 2 27 27 H 1.08998 * 117.49834 * 0.02562 * 15 13 12 28 28 H 1.08999 * 117.49906 * 145.02139 * 15 13 12 29 29 H 1.08997 * 109.47610 * 128.62299 * 17 16 15 30 30 H 1.09001 * 109.46742 * 248.62420 * 17 16 15 31 31 H 1.09006 * 109.46774 * 8.61965 * 17 16 15 32 32 H 1.08999 * 109.46832 * 351.37737 * 18 16 15 33 33 H 1.08996 * 109.46467 * 111.36937 * 18 16 15 34 34 H 1.08997 * 109.47360 * 231.37748 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3476 1.9909 1.1810 5 1 2.8000 1.4178 1.9769 6 6 2.1000 3.3456 1.3554 7 7 2.7759 4.0276 2.2557 8 14 0.8077 4.2007 0.3123 9 1 1.4601 4.8396 -0.8587 10 1 -0.1875 3.2040 -0.1582 11 1 0.1230 5.2382 1.1247 12 6 2.1543 2.1100 -1.2636 13 6 3.5561 1.8848 -1.8338 14 1 4.0205 0.9327 -1.5776 15 6 4.4703 3.1049 -1.9639 16 6 3.8594 2.4699 -3.2146 17 6 4.7917 1.6737 -4.1300 18 6 2.7374 3.2347 -3.9198 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 2.6031 4.9743 2.3773 25 1 1.4108 1.7481 -1.9736 26 1 2.0005 3.1746 -1.0872 27 1 4.0731 4.0678 -1.6428 28 1 5.5364 2.9554 -1.7930 29 1 4.3606 0.6911 -4.3218 30 1 4.9168 2.2060 -5.0729 31 1 5.7620 1.5568 -3.6472 32 1 2.4360 4.0843 -3.3069 33 1 3.0930 3.5919 -4.8862 34 1 1.8842 2.5730 -4.0683 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722874869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:13 Heat of formation + Delta-G solvation = 35.076080 kcal Electronic energy + Delta-G solvation = -13273.870011 eV Core-core repulsion = 11208.041628 eV Total energy + Delta-G solvation = -2065.828383 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.30629 -35.60265 -31.84259 -30.09187 -28.54317 -27.38119 -25.75105 -23.64556 -21.04155 -19.82792 -18.22237 -16.72323 -15.23840 -14.64580 -14.29519 -13.78076 -13.35789 -13.26164 -12.79593 -12.38214 -12.19945 -11.88336 -11.76212 -11.66926 -11.31996 -10.99934 -10.78399 -10.72730 -10.45893 -10.07924 -9.92970 -9.55605 -9.05324 -8.89131 -8.44573 -6.80539 -5.93312 -3.31461 3.31793 3.48644 3.54016 4.28277 4.56993 4.98942 5.23234 5.31788 5.39759 5.49562 5.57782 5.87268 5.95759 5.96972 6.14997 6.19293 6.24116 6.28103 6.29646 6.34452 6.44227 6.47510 6.51140 6.56263 6.69733 6.78087 6.82810 7.04143 7.09323 8.11664 8.42888 9.05518 9.78530 10.19252 11.22944 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.014952 C = 0.012534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.531442 B = 1872.154524 C = 2233.322307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.145 3.855 3 N -0.605 5.605 4 C -0.260 4.260 5 H 0.078 0.922 6 C 0.035 3.965 7 N -0.903 5.903 8 Si 0.874 3.126 9 H -0.286 1.286 10 H -0.269 1.269 11 H -0.304 1.304 12 C 0.167 3.833 13 C -0.135 4.135 14 H 0.097 0.903 15 C -0.162 4.162 16 C -0.152 4.152 17 C -0.107 4.107 18 C -0.112 4.112 19 H 0.038 0.962 20 H 0.054 0.946 21 H 0.040 0.960 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.261 0.739 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 -4.030 -10.860 11.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.019 3.981 3 N -0.327 5.327 4 C -0.389 4.389 5 H 0.096 0.904 6 C -0.165 4.165 7 N -0.544 5.544 8 Si 0.705 3.295 9 H -0.215 1.215 10 H -0.194 1.194 11 H -0.232 1.232 12 C 0.041 3.959 13 C -0.155 4.155 14 H 0.116 0.884 15 C -0.199 4.199 16 C -0.153 4.153 17 C -0.164 4.164 18 C -0.169 4.169 19 H 0.057 0.943 20 H 0.073 0.927 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.084 -3.894 -10.740 11.424 hybrid contribution -0.679 0.723 -0.448 1.088 sum -0.763 -3.171 -11.188 11.654 Atomic orbital electron populations 1.22357 0.99898 0.99189 1.01502 1.20855 0.91580 0.86667 0.99006 1.44163 1.75139 1.11168 1.02265 1.18794 1.34306 0.92947 0.92825 0.90397 1.25375 0.97827 0.96842 0.96449 1.69870 1.39876 1.07946 1.36749 0.86998 0.84262 0.79016 0.79238 1.21498 1.19364 1.23232 1.20744 0.91640 0.96454 0.87064 1.23281 0.99506 0.97356 0.95402 0.88447 1.23113 0.98569 0.98288 0.99919 1.21622 1.00133 1.03691 0.89838 1.21274 0.97980 0.98992 0.98169 1.21287 0.96986 0.99291 0.99345 0.94255 0.92664 0.94122 0.94653 0.92843 0.92884 0.94083 0.92766 0.89322 0.89730 0.92790 0.92907 0.92846 0.92642 0.92884 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.23 37.16 0.38 -2.80 16 2 C 0.14 2.94 6.39 -4.04 -0.03 2.91 16 3 N -0.61 -14.63 2.12 -173.24 -0.37 -14.99 16 4 C -0.26 -7.36 9.91 -15.06 -0.15 -7.51 16 5 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 6 C 0.03 1.02 5.32 -17.43 -0.09 0.93 16 7 N -0.90 -27.88 13.97 55.49 0.78 -27.10 16 8 Si 0.87 22.67 24.94 -169.99 -4.24 18.43 16 9 H -0.29 -7.19 6.67 56.52 0.38 -6.82 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 12 C 0.17 3.71 3.89 -4.04 -0.02 3.69 16 13 C -0.13 -2.67 5.73 -90.62 -0.52 -3.19 16 14 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 15 C -0.16 -3.10 9.47 -26.73 -0.25 -3.36 16 16 C -0.15 -2.52 2.70 -154.51 -0.42 -2.94 16 17 C -0.11 -1.45 9.85 37.16 0.37 -1.08 16 18 C -0.11 -1.73 8.86 37.16 0.33 -1.40 16 19 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 20 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 21 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.04 0.64 8.11 -51.92 -0.42 0.22 16 23 H 0.05 1.08 8.00 -51.93 -0.42 0.66 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.04 0.85 7.70 -51.93 -0.40 0.45 16 26 H 0.05 1.33 2.71 -51.93 -0.14 1.19 16 27 H 0.09 1.86 7.94 -51.93 -0.41 1.44 16 28 H 0.08 1.51 8.05 -51.93 -0.42 1.09 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.63 7.92 -51.93 -0.41 0.22 16 31 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 32 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 33 H 0.05 0.69 7.92 -51.93 -0.41 0.28 16 34 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 LS Contribution 273.33 15.07 4.12 4.12 Total: -1.00 -30.00 273.33 -6.06 -36.07 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.95 Total: -1.78 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -0.40 Total: -14.75 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.41 Total: -42.10 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.24 Total: 18.43 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.00 -6.06 -36.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722874869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.145 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds