Wall clock time and date at job start Mon Mar 30 2020 02:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47218 * 2 1 4 4 C 1.36930 * 120.00077 * 95.18629 * 3 2 1 5 5 H 1.08007 * 119.99996 * 35.49343 * 4 3 2 6 6 C 1.38815 * 120.00355 * 215.49477 * 4 3 2 7 7 N 1.31622 * 119.99916 * 202.24698 * 6 4 3 8 8 Si 1.86797 * 119.99791 * 22.24941 * 6 4 3 9 9 H 1.48497 * 109.47079 * 264.67522 * 8 6 4 10 10 H 1.48499 * 109.47112 * 24.67525 * 8 6 4 11 11 H 1.48500 * 109.47262 * 144.67197 * 8 6 4 12 12 C 1.46502 * 119.99876 * 275.18867 * 3 2 1 13 13 C 1.53001 * 109.46850 * 269.99717 * 12 3 2 14 14 H 1.08991 * 115.55142 * 29.33359 * 13 12 3 15 15 C 1.53001 * 117.49953 * 243.62014 * 13 12 3 16 16 C 1.52994 * 60.00276 * 252.51353 * 15 13 12 17 17 C 1.53000 * 117.50251 * 252.51307 * 16 15 13 18 18 C 1.53007 * 117.51968 * 107.47718 * 16 15 13 19 19 H 1.09005 * 109.47055 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47314 * 299.99704 * 1 2 3 21 21 H 1.09003 * 109.47233 * 60.00030 * 1 2 3 22 22 H 1.09007 * 109.47064 * 239.99606 * 2 1 3 23 23 H 1.09001 * 109.47233 * 120.00515 * 2 1 3 24 24 H 0.96995 * 119.99436 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.47296 * 30.00093 * 12 3 2 26 26 H 1.09002 * 109.46524 * 150.00233 * 12 3 2 27 27 H 1.08998 * 117.49834 * 0.02562 * 15 13 12 28 28 H 1.08999 * 117.49906 * 145.02139 * 15 13 12 29 29 H 1.08997 * 109.47610 * 128.62299 * 17 16 15 30 30 H 1.09001 * 109.46742 * 248.62420 * 17 16 15 31 31 H 1.09006 * 109.46774 * 8.61965 * 17 16 15 32 32 H 1.08999 * 109.46832 * 351.37737 * 18 16 15 33 33 H 1.08996 * 109.46467 * 111.36937 * 18 16 15 34 34 H 1.08997 * 109.47360 * 231.37748 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3476 1.9909 1.1810 5 1 2.8000 1.4178 1.9769 6 6 2.1000 3.3456 1.3554 7 7 2.7759 4.0276 2.2557 8 14 0.8077 4.2007 0.3123 9 1 1.4601 4.8396 -0.8587 10 1 -0.1875 3.2040 -0.1582 11 1 0.1230 5.2382 1.1247 12 6 2.1543 2.1100 -1.2636 13 6 3.5561 1.8848 -1.8338 14 1 4.0205 0.9327 -1.5776 15 6 4.4703 3.1049 -1.9639 16 6 3.8594 2.4699 -3.2146 17 6 4.7917 1.6737 -4.1300 18 6 2.7374 3.2347 -3.9198 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 2.6031 4.9743 2.3773 25 1 1.4108 1.7481 -1.9736 26 1 2.0005 3.1746 -1.0872 27 1 4.0731 4.0678 -1.6428 28 1 5.5364 2.9554 -1.7930 29 1 4.3606 0.6911 -4.3218 30 1 4.9168 2.2060 -5.0729 31 1 5.7620 1.5568 -3.6472 32 1 2.4360 4.0843 -3.3069 33 1 3.0930 3.5919 -4.8862 34 1 1.8842 2.5730 -4.0683 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722874869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:13 Heat of formation + Delta-G solvation = 17.712828 kcal Electronic energy + Delta-G solvation = -13274.622938 eV Core-core repulsion = 11208.041628 eV Total energy + Delta-G solvation = -2066.581310 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81092 -37.37393 -33.96525 -31.68015 -30.04044 -28.63481 -27.46852 -25.50814 -22.69475 -21.57264 -19.64602 -18.72224 -17.25015 -16.30435 -15.87306 -15.34332 -15.00732 -14.78194 -14.42282 -14.10854 -13.74835 -13.42188 -13.11213 -13.04358 -12.91065 -12.66092 -12.54874 -12.23070 -12.09954 -11.94483 -11.60839 -11.52779 -10.68908 -10.53794 -10.32425 -8.79147 -8.19051 -5.52985 1.24468 1.35932 1.46713 2.40306 2.81642 3.07419 3.42555 3.84428 3.95487 4.06451 4.24616 4.39365 4.56373 4.64402 4.74167 4.78440 4.81249 4.84759 4.92837 5.03596 5.04483 5.06421 5.10342 5.12878 5.23163 5.28745 5.39617 5.52439 5.55277 5.95903 6.16915 7.01100 7.67010 8.08183 9.01420 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.014952 C = 0.012534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.531442 B = 1872.154524 C = 2233.322307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 N -0.618 5.618 4 C -0.247 4.247 5 H 0.042 0.958 6 C -0.019 4.019 7 N -0.950 5.950 8 Si 0.935 3.065 9 H -0.277 1.277 10 H -0.257 1.257 11 H -0.312 1.312 12 C 0.165 3.835 13 C -0.155 4.155 14 H 0.094 0.906 15 C -0.183 4.183 16 C -0.117 4.117 17 C -0.106 4.106 18 C -0.116 4.116 19 H 0.076 0.924 20 H 0.029 0.971 21 H 0.042 0.958 22 H 0.064 0.936 23 H 0.046 0.954 24 H 0.260 0.740 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 -5.089 -13.795 14.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 N -0.341 5.341 4 C -0.377 4.377 5 H 0.059 0.941 6 C -0.215 4.215 7 N -0.595 5.595 8 Si 0.765 3.235 9 H -0.205 1.205 10 H -0.181 1.181 11 H -0.241 1.241 12 C 0.041 3.959 13 C -0.176 4.176 14 H 0.112 0.888 15 C -0.220 4.220 16 C -0.118 4.118 17 C -0.162 4.162 18 C -0.173 4.173 19 H 0.094 0.906 20 H 0.049 0.951 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.796 -4.987 -13.714 14.614 hybrid contribution -0.398 0.952 0.475 1.135 sum -1.194 -4.036 -13.239 13.891 Atomic orbital electron populations 1.22237 0.98202 1.01291 1.00345 1.21034 0.92874 0.84593 1.00087 1.44313 1.75734 1.12466 1.01594 1.18676 1.32690 0.92756 0.93550 0.94076 1.25919 0.99621 0.97725 0.98208 1.69992 1.41822 1.08228 1.39489 0.85993 0.81712 0.77937 0.77844 1.20452 1.18146 1.24129 1.20755 0.93734 0.94891 0.86560 1.23104 0.98176 0.97295 0.98975 0.88767 1.23116 0.98856 0.96923 1.03111 1.21797 0.99767 1.01440 0.88758 1.21321 0.97219 0.99398 0.98311 1.21375 0.97025 0.98702 1.00232 0.90554 0.95136 0.93856 0.91798 0.93543 0.93080 0.91936 0.95076 0.91890 0.89049 0.91422 0.90540 0.92735 0.94685 0.89911 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.61 10.23 71.98 0.74 -4.88 16 2 C 0.14 5.38 6.39 86.38 0.55 5.93 16 3 N -0.62 -29.47 2.12 -702.00 -1.49 -30.96 16 4 C -0.25 -14.28 9.91 84.04 0.83 -13.45 16 5 H 0.04 2.64 8.06 -2.91 -0.02 2.61 16 6 C -0.02 -1.13 5.32 84.86 0.45 -0.68 16 7 N -0.95 -60.81 13.97 21.65 0.30 -60.51 16 8 Si 0.94 47.66 24.94 68.60 1.71 49.38 16 9 H -0.28 -13.52 6.67 99.48 0.66 -12.86 16 10 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.31 -16.17 7.11 99.48 0.71 -15.46 16 12 C 0.17 7.11 3.89 86.38 0.34 7.45 16 13 C -0.16 -5.93 5.73 -10.79 -0.06 -5.99 16 14 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 15 C -0.18 -6.92 9.47 30.59 0.29 -6.63 16 16 C -0.12 -3.54 2.70 -52.18 -0.14 -3.68 16 17 C -0.11 -2.43 9.85 71.98 0.71 -1.72 16 18 C -0.12 -3.20 8.86 71.98 0.64 -2.56 16 19 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 20 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.06 2.12 8.11 -2.38 -0.02 2.10 16 23 H 0.05 1.84 8.00 -2.39 -0.02 1.82 16 24 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 25 H 0.06 2.39 7.70 -2.39 -0.02 2.37 16 26 H 0.03 1.50 2.71 -2.39 -0.01 1.49 16 27 H 0.06 2.68 7.94 -2.39 -0.02 2.67 16 28 H 0.09 3.24 8.05 -2.39 -0.02 3.22 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.44 7.92 -2.39 -0.02 1.42 16 31 H 0.05 1.26 7.90 -2.38 -0.02 1.24 16 32 H 0.03 1.10 7.90 -2.39 -0.02 1.08 16 33 H 0.08 1.79 7.92 -2.39 -0.02 1.77 16 34 H 0.07 1.71 7.83 -2.39 -0.02 1.70 16 Total: -1.00 -65.95 273.33 5.86 -60.09 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.99 Total: 8.20 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 4.34 Total: -26.20 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -1.19 Total: -91.47 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.71 Total: 49.38 kcal Total: -65.95 5.86 -60.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722874869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.804 kcal (2) G-P(sol) polarization free energy of solvation -65.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds