Wall clock time and date at job start Mon Mar 30 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30707 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48500 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46833 * 300.00131 * 3 2 1 6 6 H 1.48497 * 109.46998 * 59.99481 * 3 2 1 7 7 C 1.40217 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99720 * 179.72457 * 7 2 1 9 9 C 1.40745 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.41061 * 125.37254 * 359.41679 * 9 7 2 11 11 C 1.38464 * 108.23148 * 179.82890 * 10 9 7 12 12 C 1.40463 * 124.97960 * 180.18488 * 11 10 9 13 13 C 1.38288 * 127.63989 * 180.30891 * 12 11 10 14 14 C 1.38642 * 129.27848 * 0.02562 * 13 12 11 15 15 C 1.38633 * 130.40953 * 0.02562 * 14 13 12 16 16 C 1.38301 * 129.28126 * 359.92302 * 15 14 13 17 17 C 1.40460 * 127.63875 * 0.13736 * 16 15 14 18 18 C 1.38459 * 124.98549 * 179.97438 * 17 16 15 19 19 H 0.96995 * 120.00298 * 0.02562 * 1 2 3 20 20 H 1.08006 * 125.88717 * 359.97438 * 10 9 7 21 21 H 1.08002 * 116.17922 * 0.28833 * 12 11 10 22 22 H 1.08008 * 115.36184 * 179.97438 * 13 12 11 23 23 H 1.08001 * 114.79540 * 179.97438 * 14 13 12 24 24 H 1.08001 * 115.36372 * 179.97438 * 15 14 13 25 25 H 1.08002 * 116.17850 * 180.02562 * 16 15 14 26 26 H 1.08001 * 125.88417 * 359.93796 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.7010 1.3465 -0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8822 2.3965 1.2124 7 6 2.0082 -1.2143 0.0005 8 1 3.0882 -1.2142 -0.0040 9 6 1.3045 -2.4332 0.0005 10 6 -0.0998 -2.5654 0.0117 11 6 -0.4080 -3.9153 0.0038 12 6 -1.7092 -4.4442 0.0073 13 6 -2.0791 -5.7767 0.0058 14 6 -1.2799 -6.9096 0.0010 15 6 0.1007 -7.0353 -0.0030 16 6 1.0699 -6.0487 -0.0049 17 6 0.8774 -4.6573 -0.0004 18 6 1.8924 -3.7155 -0.0021 19 1 -0.4850 0.8400 -0.0004 20 1 -0.8121 -1.7535 0.0221 21 1 -2.5156 -3.7258 0.0120 22 1 -3.1433 -5.9614 0.0096 23 1 -1.8199 -7.8449 0.0013 24 1 0.4729 -8.0492 -0.0059 25 1 2.0952 -6.3879 -0.0086 26 1 2.9516 -3.9263 -0.0060 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001041306.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:25 Heat of formation + Delta-G solvation = 60.821130 kcal Electronic energy + Delta-G solvation = -11349.870547 eV Core-core repulsion = 9358.915716 eV Total energy + Delta-G solvation = -1990.954830 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 198.074 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.38631 -35.20075 -33.64856 -31.70610 -29.34647 -26.76640 -26.23752 -22.58279 -21.49343 -18.93706 -17.46868 -16.63007 -16.01918 -15.16445 -14.88018 -13.44766 -13.16767 -12.24082 -12.10730 -12.08698 -11.59377 -11.44432 -11.28405 -10.85728 -10.44224 -10.34620 -10.08436 -9.93562 -9.64087 -9.55934 -9.01246 -7.20403 -7.16400 -6.00431 -4.47581 1.16924 1.77351 2.72498 2.77824 2.85413 3.50685 3.79901 4.52644 4.92097 5.26439 5.76353 5.81279 6.04690 6.16613 6.39425 6.47264 6.55561 6.85908 6.93164 7.06925 7.19171 7.25828 7.49668 7.66102 7.83698 7.86619 7.91492 8.01734 8.30629 8.41169 8.48959 8.73615 9.53516 Molecular weight = 198.07amu Principal moments of inertia in cm(-1) A = 0.070648 B = 0.008977 C = 0.007988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.235845 B = 3118.236051 C = 3504.624634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.054 3.946 3 Si 0.932 3.068 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.353 4.353 8 H 0.092 0.908 9 C 0.112 3.888 10 C -0.251 4.251 11 C -0.023 4.023 12 C -0.176 4.176 13 C -0.068 4.068 14 C -0.233 4.233 15 C -0.059 4.059 16 C -0.202 4.202 17 C 0.014 3.986 18 C -0.317 4.317 19 H 0.292 0.708 20 H 0.159 0.841 21 H 0.095 0.905 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 0.349 0.007 0.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.171 4.171 3 Si 0.754 3.246 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.378 4.378 8 H 0.111 0.889 9 C 0.108 3.892 10 C -0.270 4.270 11 C -0.024 4.024 12 C -0.196 4.196 13 C -0.087 4.087 14 C -0.253 4.253 15 C -0.077 4.077 16 C -0.221 4.221 17 C 0.014 3.986 18 C -0.335 4.335 19 H 0.104 0.896 20 H 0.176 0.824 21 H 0.113 0.887 22 H 0.105 0.895 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.116 0.559 0.008 0.571 hybrid contribution 0.284 0.543 -0.007 0.613 sum 0.400 1.102 0.000 1.173 Atomic orbital electron populations 1.69685 1.08209 1.30380 1.27570 1.26538 0.95220 1.03038 0.92282 0.85837 0.80739 0.78673 0.79320 1.17656 1.19007 1.18995 1.20149 0.95785 0.90125 1.31737 0.88944 1.18500 0.93279 0.91840 0.85569 1.22616 0.96210 0.94159 1.14000 1.19791 0.91182 0.94644 0.96737 1.20434 0.94711 0.94294 1.10114 1.20479 0.97727 0.92083 0.98373 1.20118 0.93358 0.96370 1.15407 1.20464 0.92660 0.97063 0.97539 1.20331 0.97397 0.91429 1.12984 1.19549 0.93340 0.92046 0.93711 1.21356 0.96430 0.92690 1.23054 0.89584 0.82426 0.88697 0.89479 0.89951 0.89545 0.89017 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.02 10.16 55.56 0.56 -16.46 15 2 C 0.05 1.20 5.50 -17.29 -0.10 1.10 15 3 Si 0.93 16.17 29.56 -169.99 -5.03 11.15 15 4 H -0.25 -4.33 7.11 56.52 0.40 -3.93 15 5 H -0.27 -4.52 7.11 56.52 0.40 -4.12 15 6 H -0.27 -4.52 7.11 56.52 0.40 -4.12 15 7 C -0.35 -8.61 9.35 -37.89 -0.35 -8.96 15 8 H 0.09 2.08 7.85 -52.49 -0.41 1.67 15 9 C 0.11 2.97 5.87 -106.81 -0.63 2.34 15 10 C -0.25 -6.69 9.57 -38.43 -0.37 -7.06 15 11 C -0.02 -0.59 6.10 -104.78 -0.64 -1.23 15 12 C -0.18 -4.12 9.60 -38.73 -0.37 -4.49 15 13 C -0.07 -1.44 9.62 -39.41 -0.38 -1.82 15 14 C -0.23 -4.82 9.60 -39.29 -0.38 -5.19 15 15 C -0.06 -1.24 9.62 -39.41 -0.38 -1.61 15 16 C -0.20 -4.63 9.60 -38.72 -0.37 -5.00 15 17 C 0.01 0.36 6.10 -104.78 -0.64 -0.28 15 18 C -0.32 -8.10 10.65 -38.43 -0.41 -8.51 15 19 H 0.29 5.89 8.29 -40.82 -0.34 5.55 15 20 H 0.16 4.19 5.57 -52.48 -0.29 3.90 15 21 H 0.09 2.05 8.06 -52.49 -0.42 1.63 15 22 H 0.09 1.56 8.06 -52.48 -0.42 1.14 15 23 H 0.08 1.47 8.06 -52.49 -0.42 1.04 15 24 H 0.09 1.53 8.06 -52.49 -0.42 1.11 15 25 H 0.09 1.91 8.06 -52.49 -0.42 1.49 15 26 H 0.11 2.55 8.06 -52.49 -0.42 2.12 15 LS Contribution 232.30 15.07 3.50 3.50 Total: -1.00 -26.69 232.30 -8.35 -35.04 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -2.38 Total: 7.49 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: -5.01 Total: -40.72 kcal Atomic # 7 Polarization: -17.02 SS G_CDS: 0.56 Total: -16.46 kcal Atomic # 14 Polarization: 16.17 SS G_CDS: -5.03 Total: 11.15 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -26.69 -8.35 -35.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001041306.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.864 kcal (2) G-P(sol) polarization free energy of solvation -26.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds