Wall clock time and date at job start Mon Mar 30 2020 02:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08998 * 110.29347 * 299.33262 * 9 7 2 11 11 C 1.54504 * 110.31873 * 177.10352 * 9 7 2 12 12 O 1.44957 * 103.00618 * 219.40894 * 11 9 7 13 13 C 1.43663 * 103.18374 * 35.73227 * 12 11 9 14 14 C 1.53655 * 110.31078 * 82.38143 * 13 12 11 15 15 C 1.55036 * 104.04670 * 97.21613 * 14 13 12 16 16 C 1.54944 * 102.82083 * 37.42080 * 15 14 13 17 17 C 1.53254 * 110.55133 * 200.81627 * 13 12 11 18 18 O 1.43040 * 107.16159 * 321.82307 * 13 12 11 19 19 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 20 20 H 1.08994 * 110.70844 * 337.79378 * 11 9 7 21 21 H 1.08998 * 110.70575 * 101.03453 * 11 9 7 22 22 H 1.08999 * 110.51766 * 215.86005 * 14 13 12 23 23 H 1.09003 * 110.51909 * 338.57529 * 14 13 12 24 24 H 1.08993 * 110.74128 * 279.08860 * 15 14 13 25 25 H 1.09003 * 110.74091 * 155.75208 * 15 14 13 26 26 H 1.08999 * 110.48177 * 203.72176 * 16 15 14 27 27 H 1.09002 * 110.48190 * 81.08974 * 16 15 14 28 28 H 1.09002 * 110.07619 * 358.77651 * 17 13 12 29 29 H 1.08995 * 110.07716 * 120.27047 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6320 -2.5743 0.8993 11 6 2.2355 -3.6875 -0.0698 12 8 1.5610 -4.6145 -0.9569 13 6 0.9126 -3.7495 -1.9031 14 6 1.9013 -3.3203 -2.9981 15 6 1.6175 -4.2995 -4.1662 16 6 0.0786 -4.4695 -4.1061 17 6 -0.2431 -4.4799 -2.5956 18 8 0.4368 -2.6120 -1.1779 19 1 -0.4850 0.8401 0.0004 20 1 3.1887 -3.3722 -0.4941 21 1 2.3790 -4.1319 0.9151 22 1 1.7081 -2.2926 -3.3057 23 1 2.9283 -3.4290 -2.6496 24 1 2.1180 -5.2534 -4.0004 25 1 1.9208 -3.8632 -5.1179 26 1 -0.2193 -5.4117 -4.5660 27 1 -0.4172 -3.6314 -4.5959 28 1 -0.3075 -5.5061 -2.2339 29 1 -1.1814 -3.9579 -2.4084 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019726921.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:27 Heat of formation + Delta-G solvation = -104.093649 kcal Electronic energy + Delta-G solvation = -13365.392173 eV Core-core repulsion = 11059.977182 eV Total energy + Delta-G solvation = -2305.414992 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.64921 -35.75692 -33.82608 -32.39255 -29.20366 -28.17863 -25.98702 -24.56213 -21.15600 -20.23447 -19.44727 -16.72561 -16.16567 -15.57183 -14.69965 -14.45782 -14.13283 -13.41316 -13.04783 -12.39226 -12.04793 -11.89786 -11.37159 -11.06503 -10.93630 -10.75780 -10.73325 -10.60373 -10.49734 -10.24427 -10.14223 -9.38335 -9.05547 -8.59695 -8.04330 -6.06618 -4.22219 3.25900 3.33953 3.37277 4.36568 4.65750 4.95020 5.11617 5.18197 5.34541 5.51856 5.91404 5.94563 6.03331 6.11939 6.14264 6.19575 6.24942 6.34913 6.40971 6.54251 6.61923 6.77584 6.82755 7.05532 7.48678 7.79553 8.14938 8.51995 8.90326 9.49978 11.00360 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.047414 B = 0.011760 C = 0.011195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.403021 B = 2380.473269 C = 2500.530812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.080 3.920 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.182 3.818 10 H 0.048 0.952 11 C 0.020 3.980 12 O -0.393 6.393 13 C 0.246 3.754 14 C -0.148 4.148 15 C -0.122 4.122 16 C -0.120 4.120 17 C -0.116 4.116 18 O -0.353 6.353 19 H 0.262 0.738 20 H 0.062 0.938 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 -6.275 -5.201 8.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.586 4.586 8 H 0.081 0.919 9 C 0.127 3.873 10 H 0.066 0.934 11 C -0.057 4.057 12 O -0.314 6.314 13 C 0.168 3.832 14 C -0.186 4.186 15 C -0.160 4.160 16 C -0.158 4.158 17 C -0.154 4.154 18 O -0.274 6.274 19 H 0.072 0.928 20 H 0.080 0.920 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.575 -6.266 -5.243 8.321 hybrid contribution 0.672 1.054 0.082 1.253 sum 2.247 -5.212 -5.161 7.671 Atomic orbital electron populations 1.70053 1.06060 1.26623 1.46887 1.25049 0.94755 0.99314 0.93505 0.86547 0.80201 0.83542 0.77743 1.19591 1.20783 1.20781 1.21253 0.92761 0.90277 1.54266 0.91862 1.21092 0.87857 0.92559 0.85833 0.93383 1.24435 0.97353 0.90454 0.93434 1.89188 1.67799 1.31054 1.43344 1.23537 0.89474 0.81787 0.88388 1.23008 0.99740 1.00174 0.95693 1.22459 0.95909 0.99373 0.98229 1.22329 0.96309 1.01182 0.95968 1.22112 0.98332 1.00582 0.94392 1.89147 1.57439 1.44057 1.36772 0.92849 0.91991 0.89951 0.89817 0.91428 0.91773 0.91926 0.91923 0.91488 0.90814 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.53 12.93 55.43 0.72 -24.81 15 2 C 0.08 2.26 5.42 -17.82 -0.10 2.16 15 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.55 -15.24 8.78 -34.44 -0.30 -15.54 15 8 H 0.06 1.70 7.57 -52.49 -0.40 1.30 15 9 C 0.18 4.80 3.58 -27.10 -0.10 4.71 15 10 H 0.05 1.35 8.14 -51.93 -0.42 0.93 15 11 C 0.02 0.43 6.95 37.95 0.26 0.70 15 12 O -0.39 -8.72 11.13 -59.26 -0.66 -9.38 15 13 C 0.25 5.42 1.41 -26.26 -0.04 5.38 15 14 C -0.15 -2.92 6.08 -25.32 -0.15 -3.08 15 15 C -0.12 -1.91 6.91 -24.63 -0.17 -2.08 15 16 C -0.12 -1.84 6.84 -24.95 -0.17 -2.01 15 17 C -0.12 -2.16 6.46 -25.85 -0.17 -2.32 15 18 O -0.35 -9.47 10.07 -59.26 -0.60 -10.07 15 19 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 20 H 0.06 1.33 7.06 -51.93 -0.37 0.96 15 21 H 0.08 1.62 8.14 -51.93 -0.42 1.20 15 22 H 0.08 1.78 8.10 -51.93 -0.42 1.36 15 23 H 0.07 1.32 7.22 -51.93 -0.37 0.95 15 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 28 H 0.07 1.28 7.97 -51.93 -0.41 0.86 15 29 H 0.08 1.56 7.98 -51.93 -0.41 1.15 15 LS Contribution 240.46 15.07 3.62 3.62 Total: -1.00 -30.40 240.46 -6.93 -37.32 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.06 Total: -0.76 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.93 Total: -12.08 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.72 Total: -24.81 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.26 Total: -19.45 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.40 -6.93 -37.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019726921.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.771 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds