Wall clock time and date at job start Mon Mar 30 2020 02:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08998 * 110.29347 * 299.33262 * 9 7 2 11 11 C 1.54504 * 110.31873 * 177.10352 * 9 7 2 12 12 O 1.44957 * 103.00618 * 219.40894 * 11 9 7 13 13 C 1.43663 * 103.18374 * 35.73227 * 12 11 9 14 14 C 1.53655 * 110.31078 * 82.38143 * 13 12 11 15 15 C 1.55036 * 104.04670 * 97.21613 * 14 13 12 16 16 C 1.54944 * 102.82083 * 37.42080 * 15 14 13 17 17 C 1.53254 * 110.55133 * 200.81627 * 13 12 11 18 18 O 1.43040 * 107.16159 * 321.82307 * 13 12 11 19 19 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 20 20 H 1.08994 * 110.70844 * 337.79378 * 11 9 7 21 21 H 1.08998 * 110.70575 * 101.03453 * 11 9 7 22 22 H 1.08999 * 110.51766 * 215.86005 * 14 13 12 23 23 H 1.09003 * 110.51909 * 338.57529 * 14 13 12 24 24 H 1.08993 * 110.74128 * 279.08860 * 15 14 13 25 25 H 1.09003 * 110.74091 * 155.75208 * 15 14 13 26 26 H 1.08999 * 110.48177 * 203.72176 * 16 15 14 27 27 H 1.09002 * 110.48190 * 81.08974 * 16 15 14 28 28 H 1.09002 * 110.07619 * 358.77651 * 17 13 12 29 29 H 1.08995 * 110.07716 * 120.27047 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6320 -2.5743 0.8993 11 6 2.2355 -3.6875 -0.0698 12 8 1.5610 -4.6145 -0.9569 13 6 0.9126 -3.7495 -1.9031 14 6 1.9013 -3.3203 -2.9981 15 6 1.6175 -4.2995 -4.1662 16 6 0.0786 -4.4695 -4.1061 17 6 -0.2431 -4.4799 -2.5956 18 8 0.4368 -2.6120 -1.1779 19 1 -0.4850 0.8401 0.0004 20 1 3.1887 -3.3722 -0.4941 21 1 2.3790 -4.1319 0.9151 22 1 1.7081 -2.2926 -3.3057 23 1 2.9283 -3.4290 -2.6496 24 1 2.1180 -5.2534 -4.0004 25 1 1.9208 -3.8632 -5.1179 26 1 -0.2193 -5.4117 -4.5660 27 1 -0.4172 -3.6314 -4.5959 28 1 -0.3075 -5.5061 -2.2339 29 1 -1.1814 -3.9579 -2.4084 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019726921.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:26 Heat of formation + Delta-G solvation = -123.789183 kcal Electronic energy + Delta-G solvation = -13366.246236 eV Core-core repulsion = 11059.977182 eV Total energy + Delta-G solvation = -2306.269054 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.41004 -37.27917 -35.73521 -34.48065 -31.07471 -29.67000 -27.64252 -26.49991 -23.10578 -21.60277 -21.10520 -18.84407 -17.88286 -17.26603 -16.60098 -16.23022 -15.57505 -15.28230 -14.74568 -14.02900 -13.90532 -13.67932 -13.09433 -12.89145 -12.73791 -12.42009 -12.34487 -12.18847 -12.05411 -11.93238 -11.46180 -11.31959 -10.89175 -10.69751 -9.99786 -8.20027 -6.43479 1.39232 1.40100 1.52885 2.37060 2.91070 3.05789 3.49394 3.70832 3.75284 4.16192 4.23418 4.27777 4.49200 4.51198 4.63648 4.68556 4.81933 4.86206 5.00388 5.07652 5.14197 5.25158 5.33156 5.44547 5.45848 5.63311 6.04748 6.54624 6.85793 7.33611 8.88188 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.047414 B = 0.011760 C = 0.011195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.403021 B = 2380.473269 C = 2500.530812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.563 4.563 8 H 0.069 0.931 9 C 0.173 3.827 10 H 0.015 0.985 11 C 0.030 3.970 12 O -0.393 6.393 13 C 0.227 3.773 14 C -0.149 4.149 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.118 4.118 18 O -0.388 6.388 19 H 0.263 0.737 20 H 0.070 0.930 21 H 0.107 0.893 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 -6.828 -6.456 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.600 4.600 8 H 0.088 0.912 9 C 0.117 3.883 10 H 0.033 0.967 11 C -0.047 4.047 12 O -0.314 6.314 13 C 0.150 3.850 14 C -0.187 4.187 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.156 4.156 18 O -0.309 6.309 19 H 0.072 0.928 20 H 0.088 0.912 21 H 0.125 0.875 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.718 -6.838 -6.500 9.818 hybrid contribution 0.290 1.170 0.495 1.303 sum 3.008 -5.668 -6.005 8.788 Atomic orbital electron populations 1.70195 1.07869 1.27627 1.48225 1.25969 0.95591 1.03247 0.92980 0.85412 0.79217 0.78610 0.77805 1.18325 1.20609 1.20025 1.21605 0.93198 0.91256 1.53956 0.91248 1.21007 0.88197 0.94156 0.84913 0.96684 1.24339 0.96358 0.89091 0.94863 1.89167 1.67848 1.30959 1.43462 1.24121 0.91389 0.81037 0.88437 1.22960 0.98873 1.00122 0.96777 1.22456 0.96161 0.98848 0.97363 1.22347 0.96085 1.03180 0.93365 1.22179 0.96279 1.00412 0.96708 1.89074 1.58323 1.46310 1.37233 0.92775 0.91183 0.87536 0.92110 0.91722 0.90319 0.89436 0.88401 0.91369 0.89580 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.91 12.93 21.45 0.28 -54.63 15 2 C 0.02 1.40 5.42 84.66 0.46 1.86 15 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 15 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 7 C -0.56 -31.70 8.78 25.60 0.22 -31.48 15 8 H 0.07 3.71 7.57 -2.92 -0.02 3.69 15 9 C 0.17 9.36 3.58 30.36 0.11 9.47 15 10 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 11 C 0.03 1.31 6.95 72.49 0.50 1.81 15 12 O -0.39 -17.15 11.13 -126.01 -1.40 -18.55 15 13 C 0.23 9.95 1.41 30.90 0.04 10.00 15 14 C -0.15 -5.74 6.08 31.51 0.19 -5.55 15 15 C -0.11 -3.11 6.91 31.96 0.22 -2.89 15 16 C -0.11 -3.09 6.84 31.75 0.22 -2.88 15 17 C -0.12 -4.24 6.46 31.17 0.20 -4.04 15 18 O -0.39 -21.38 10.07 -126.01 -1.27 -22.65 15 19 H 0.26 15.02 8.31 -92.71 -0.77 14.25 15 20 H 0.07 2.95 7.06 -2.39 -0.02 2.93 15 21 H 0.11 4.09 8.14 -2.39 -0.02 4.07 15 22 H 0.06 2.59 8.10 -2.39 -0.02 2.57 15 23 H 0.06 2.47 7.22 -2.39 -0.02 2.45 15 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 15 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 28 H 0.09 2.83 7.97 -2.39 -0.02 2.81 15 29 H 0.07 2.56 7.98 -2.39 -0.02 2.54 15 Total: -1.00 -66.17 240.46 2.92 -63.25 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.12 Total: 10.56 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 2.17 Total: -23.70 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.28 Total: -54.63 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -2.67 Total: -41.19 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.17 2.92 -63.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019726921.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.539 kcal (2) G-P(sol) polarization free energy of solvation -66.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds