Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.53028 * 54.29958 * 11 10 9 13 13 N 1.47303 * 110.59897 * 291.46928 * 11 10 9 14 14 C 1.34868 * 106.43625 * 241.52243 * 13 11 10 15 15 O 1.21544 * 123.72709 * 179.97438 * 14 13 11 16 16 N 1.33784 * 112.50316 * 359.86148 * 14 13 11 17 17 C 1.34772 * 111.64588 * 0.09474 * 16 14 13 18 18 O 1.21228 * 127.15897 * 179.97438 * 17 16 14 19 19 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 21 21 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 22 22 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 23 23 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 24 24 H 0.97000 * 126.68934 * 61.44288 * 13 11 10 25 25 H 0.97003 * 124.18000 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 1 5.9339 -2.0408 0.8299 13 7 6.0699 -2.1317 -1.2822 14 6 6.7815 -3.1384 -1.8290 15 8 7.3506 -3.0586 -2.9000 16 7 6.7932 -4.2335 -1.0604 17 6 6.0849 -4.0536 0.0720 18 8 5.9103 -4.8580 0.9620 19 1 -0.4850 0.8400 -0.0004 20 1 3.8753 -0.6803 -0.8889 21 1 3.8746 -0.6799 0.8911 22 1 3.6579 -3.1505 0.8908 23 1 3.6587 -3.1502 -0.8892 24 1 5.9257 -1.2494 -1.6587 25 1 7.2536 -5.0557 -1.2903 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039296064.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = -86.556719 kcal Electronic energy + Delta-G solvation = -12328.342007 eV Core-core repulsion = 9920.147130 eV Total energy + Delta-G solvation = -2408.194877 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.29738 -39.69080 -37.59630 -36.05325 -34.68304 -32.94057 -29.42542 -25.96459 -23.87665 -22.66796 -22.01311 -19.39052 -18.90323 -17.91061 -17.51146 -16.87458 -16.54878 -16.21903 -15.61861 -15.28000 -14.77105 -14.44331 -14.03664 -13.18939 -12.80474 -12.43523 -11.99692 -11.83341 -11.63833 -11.48028 -11.38357 -11.15321 -10.72640 -10.42176 -8.25201 -6.30744 0.55275 1.42593 1.44594 1.48017 1.55369 1.96430 2.19863 2.40737 3.04337 3.11329 3.80861 3.99093 4.38027 4.62408 4.70572 4.96981 5.10558 5.42155 5.52832 5.67699 5.81696 5.89968 6.29616 6.40260 6.78799 7.14379 7.34094 8.91787 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.048291 B = 0.009144 C = 0.008270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.683417 B = 3061.347143 C = 3385.074433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.000 4.000 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.231 1.231 6 H -0.293 1.293 7 C -0.535 4.535 8 H 0.028 0.972 9 C -0.008 4.008 10 C -0.095 4.095 11 C 0.098 3.902 12 H 0.158 0.842 13 N -0.706 5.706 14 C 0.707 3.293 15 O -0.585 6.585 16 N -0.668 5.668 17 C 0.538 3.462 18 O -0.493 6.493 19 H 0.265 0.735 20 H 0.031 0.969 21 H 0.037 0.963 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.449 0.551 25 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.765 -2.824 -0.036 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.196 4.196 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.153 1.153 6 H -0.219 1.219 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.045 4.045 10 C -0.133 4.133 11 C -0.011 4.011 12 H 0.175 0.825 13 N -0.371 5.371 14 C 0.406 3.594 15 O -0.462 6.462 16 N -0.339 5.339 17 C 0.325 3.675 18 O -0.364 6.364 19 H 0.074 0.926 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.095 0.905 23 H 0.074 0.926 24 H 0.295 0.705 25 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 14.783 -3.056 -0.061 15.096 hybrid contribution -0.374 0.522 -0.352 0.732 sum 14.410 -2.535 -0.413 14.637 Atomic orbital electron populations 1.70092 1.08704 1.28175 1.52722 1.26103 0.95578 1.03889 0.94076 0.85627 0.79974 0.77628 0.79206 1.19251 1.15323 1.21944 1.21491 0.92434 0.92959 1.50449 0.95376 1.19522 0.93640 0.93524 0.97834 1.21555 0.89463 0.99577 1.02721 1.22310 0.96930 0.92348 0.89465 0.82455 1.45698 1.53179 1.16263 1.21949 1.15964 0.79538 0.81060 0.82813 1.91017 1.50822 1.82584 1.21799 1.44155 1.51003 1.17465 1.21237 1.20899 0.76306 0.89761 0.80516 1.90826 1.57726 1.50740 1.37106 0.92645 0.95085 0.94430 0.90498 0.92570 0.70456 0.71547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.56 13.96 21.45 0.30 -58.27 15 2 C 0.00 -0.01 5.47 84.65 0.46 0.46 15 3 Si 0.95 40.72 27.47 68.60 1.88 42.61 15 4 H -0.27 -10.99 7.11 99.48 0.71 -10.29 15 5 H -0.23 -8.51 6.54 99.48 0.65 -7.85 15 6 H -0.29 -12.75 7.11 99.48 0.71 -12.05 15 7 C -0.54 -28.75 9.66 25.60 0.25 -28.50 15 8 H 0.03 1.70 7.99 -2.91 -0.02 1.68 15 9 C -0.01 -0.31 3.96 29.85 0.12 -0.19 15 10 C -0.09 -3.05 4.91 30.60 0.15 -2.90 15 11 C 0.10 2.30 3.65 44.38 0.16 2.46 15 12 H 0.16 2.88 8.14 -2.39 -0.02 2.86 15 13 N -0.71 -16.08 6.04 -459.12 -2.77 -18.86 15 14 C 0.71 17.86 9.00 179.33 1.61 19.47 15 15 O -0.59 -18.64 18.04 -3.85 -0.07 -18.71 15 16 N -0.67 -14.14 5.70 -440.86 -2.51 -16.65 15 17 C 0.54 13.04 8.14 87.94 0.72 13.76 15 18 O -0.49 -14.60 18.02 -2.87 -0.05 -14.65 15 19 H 0.26 15.18 8.31 -92.71 -0.77 14.41 15 20 H 0.03 1.12 6.97 -2.39 -0.02 1.10 15 21 H 0.04 1.38 7.20 -2.39 -0.02 1.36 15 22 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.45 9.23 8.51 -92.71 -0.79 8.44 15 25 H 0.44 7.23 8.96 -92.71 -0.83 6.40 15 Total: -1.00 -69.22 227.15 -0.19 -69.41 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -0.44 Total: 10.55 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 3.47 Total: 4.56 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -4.99 Total: -93.77 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.12 Total: -33.36 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.61 kcal Total: -69.22 -0.19 -69.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039296064.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.143 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds