Wall clock time and date at job start Mon Mar 30 2020 01:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46758 * 2 1 4 4 H 1.09004 * 110.53471 * 52.17590 * 3 2 1 5 5 N 1.47306 * 110.60059 * 289.17287 * 3 2 1 6 6 C 1.34527 * 106.61849 * 241.25269 * 5 3 2 7 7 O 1.21528 * 123.77049 * 180.20671 * 6 5 3 8 8 N 1.33788 * 112.45740 * 0.38565 * 6 5 3 9 9 C 1.37511 * 124.17772 * 179.86424 * 8 6 5 10 10 H 1.08004 * 120.00398 * 145.48898 * 9 8 6 11 11 C 1.38895 * 120.00001 * 325.49186 * 9 8 6 12 12 N 1.31385 * 120.00049 * 334.88353 * 11 9 8 13 13 Si 1.86806 * 120.00150 * 154.88314 * 11 9 8 14 14 H 1.48506 * 109.46976 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.46641 * 299.99728 * 13 11 9 16 16 H 1.48494 * 109.47301 * 59.99863 * 13 11 9 17 17 C 1.34765 * 111.64623 * 359.59273 * 8 6 5 18 18 O 1.21234 * 127.15957 * 180.19766 * 17 8 6 19 19 H 1.08999 * 109.47074 * 299.99985 * 1 2 3 20 20 H 1.09000 * 109.47151 * 59.99789 * 1 2 3 21 21 H 1.08997 * 109.47273 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47006 * 240.00737 * 2 1 3 23 23 H 1.09000 * 109.47141 * 119.99654 * 2 1 3 24 24 H 0.96998 * 126.69082 * 61.51164 * 5 3 2 25 25 H 0.97002 * 119.99956 * 354.84355 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5772 2.0117 0.8063 5 7 1.7857 2.0822 -1.3024 6 6 2.9868 2.4167 -1.8077 7 8 3.1385 2.9707 -2.8786 8 7 3.9957 2.0680 -1.0012 9 6 5.3227 2.2929 -1.2826 10 1 6.0124 2.5243 -0.4843 11 6 5.7763 2.2227 -2.5935 12 7 5.1288 1.4940 -3.4745 13 14 7.3068 3.1641 -3.1041 14 1 7.5776 2.9249 -4.5446 15 1 7.0941 4.6160 -2.8754 16 1 8.4649 2.7005 -2.2986 17 6 3.5504 1.4742 0.1237 18 8 4.2189 1.0525 1.0430 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.9208 2.2359 -1.7136 25 1 4.3790 0.9464 -3.1938 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041580325.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:44 Heat of formation + Delta-G solvation = -48.246919 kcal Electronic energy + Delta-G solvation = -13009.209216 eV Core-core repulsion = 10602.675577 eV Total energy + Delta-G solvation = -2406.533639 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.29580 -37.28644 -35.66596 -34.38136 -32.58666 -30.89831 -26.83070 -24.95274 -22.38559 -21.16151 -20.26250 -17.80736 -16.77332 -16.11779 -15.25249 -14.66987 -14.36856 -14.01014 -13.71131 -13.46183 -13.02789 -12.67706 -11.90899 -11.76114 -11.38378 -10.92357 -10.86409 -10.30169 -10.13945 -9.65569 -9.22415 -8.92122 -8.68462 -8.16193 -6.72375 -4.20466 2.66483 3.33475 3.43619 3.53155 3.61452 4.14110 4.33894 4.49427 4.92427 4.99480 5.12517 5.26882 5.50077 5.55164 5.78522 5.97549 6.15941 6.30750 6.52138 7.60035 7.68815 7.82700 8.33541 8.51387 8.82855 9.20986 9.65978 10.59989 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.056464 B = 0.012730 C = 0.011368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.776413 B = 2198.932362 C = 2462.372704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.093 3.907 4 H 0.106 0.894 5 N -0.744 5.744 6 C 0.667 3.333 7 O -0.532 6.532 8 N -0.407 5.407 9 C -0.450 4.450 10 H 0.097 0.903 11 C 0.037 3.963 12 N -0.824 5.824 13 Si 1.086 2.914 14 H -0.278 1.278 15 H -0.281 1.281 16 H -0.282 1.282 17 C 0.475 3.525 18 O -0.511 6.511 19 H 0.056 0.944 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.423 0.577 25 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -1.193 4.676 9.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.016 4.016 4 H 0.123 0.877 5 N -0.411 5.411 6 C 0.370 3.630 7 O -0.405 6.405 8 N -0.138 5.138 9 C -0.574 4.574 10 H 0.115 0.885 11 C -0.178 4.178 12 N -0.452 5.452 13 Si 0.910 3.090 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.209 1.209 17 C 0.264 3.736 18 O -0.388 6.388 19 H 0.075 0.925 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.101 0.899 24 H 0.265 0.735 25 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.276 -0.739 3.226 7.095 hybrid contribution -1.589 -0.345 1.214 2.029 sum -7.865 -1.084 4.440 9.096 Atomic orbital electron populations 1.21744 0.95018 1.01925 1.01775 1.21657 0.96309 0.94107 1.03802 1.21980 0.95947 0.95875 0.87838 0.87684 1.45561 1.07885 1.66100 1.21509 1.16420 0.81105 0.80514 0.85001 1.90933 1.84145 1.45095 1.20366 1.41960 1.07597 1.46700 1.17587 1.20146 0.81460 1.58362 0.97454 0.88507 1.26491 1.04016 0.95628 0.91657 1.70588 1.18197 1.18498 1.37957 0.83299 0.73169 0.76032 0.76456 1.20272 1.20714 1.20860 1.20702 0.88997 0.78982 0.84960 1.90596 1.64362 1.48096 1.35776 0.92495 0.92701 0.92307 0.90984 0.89929 0.73471 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.85 37.16 0.37 -1.21 15 2 C -0.12 -1.74 5.68 -26.73 -0.15 -1.89 15 3 C 0.09 1.62 3.65 -68.20 -0.25 1.38 15 4 H 0.11 1.54 8.14 -51.93 -0.42 1.11 15 5 N -0.74 -13.85 6.06 -59.19 -0.36 -14.21 15 6 C 0.67 16.81 7.34 -88.02 -0.65 16.16 15 7 O -0.53 -15.38 15.24 5.34 0.08 -15.30 15 8 N -0.41 -10.88 2.51 -65.57 -0.16 -11.05 15 9 C -0.45 -13.10 9.48 -14.76 -0.14 -13.24 15 10 H 0.10 2.81 7.95 -52.48 -0.42 2.39 15 11 C 0.04 1.06 4.53 -17.50 -0.08 0.98 15 12 N -0.82 -25.01 12.17 55.49 0.68 -24.33 15 13 Si 1.09 25.11 29.99 -169.99 -5.10 20.02 15 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 16 H -0.28 -6.08 7.11 56.52 0.40 -5.67 15 17 C 0.47 11.24 7.59 -10.55 -0.08 11.16 15 18 O -0.51 -13.17 17.81 5.60 0.10 -13.07 15 19 H 0.06 0.54 8.14 -51.93 -0.42 0.11 15 20 H 0.05 0.57 7.68 -51.93 -0.40 0.17 15 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 24 H 0.42 6.41 8.61 -40.82 -0.35 6.05 15 25 H 0.27 8.39 7.11 -40.82 -0.29 8.10 15 LS Contribution 225.29 15.07 3.40 3.40 Total: -1.00 -34.49 225.29 -4.72 -39.21 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -2.37 Total: 2.00 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -0.98 Total: 13.33 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.15 Total: -49.58 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: 0.18 Total: -28.37 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.10 Total: 20.02 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -34.49 -4.72 -39.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041580325.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.038 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds